Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu6g03659 ATGATGATGGATCAGCGACAGCGAGAGAAACTGCTTCACAAAACCGAGGCCTGTGCCTTCGTGGCAGGTGTTGCTGCCGACCTTCGACCTGTCGCCGCCCCAGGAGACATCACCAACACCAACAACGTTAACAGCACCACCACCAACGTATCTCAATCTCATGGGTCGGGTCGGATCCACGACGCCAACCACCTTGGTCTCGTCGCTGCGGTTACCAACCTTGGAACTGTTCACAGGAAGAAAAGATTGCCCAGGCAGCGAAGATCCAACATCACCACCTCCACCAACACCCCCGCCTTGTTTCTCCAGATGCACCACTCCGACAACACTCTCCCCTCTAAGGAGTACGACCCTAATTTAGCATCTTCAACTCCTTCCGCCTCCTCGCTCGTGCCACCCTCCTCTCTCCAGTCCGTTAAACCCTCCACTACTCTCCGGCTCGCCGCACGTGAAATCGATCATACAAACTTGAGGTTCCTTTTCAAAAAGGAGTTAAAGAACAGTGATGTTAACTCCCTAAGGAGAATGGTATTGCCGAAGAAAGCAGCAGAGAGTTTTCTTCCAGCACTGGAGTCAAAAGAAGGAATTTTGCTCAACATGGATGACAAAGATGGGACTCATGCATGGAGTTTCAAGTACAGGTTTTGGCCTAACAACAATAGCAGGATGTACGTACTTGAAAATACCGGAGATTTTGTCCGCACACATGGCCTTCGATTTGGCGATACCATTATGATTTACCAAGATATTGAAAACAATAACTATGTTATTCAGGCTAGAAAAGCTTCGGAAGAAGATGAATTTGTGGAACAAAACAGTGAGATTATGAACGACATGTTCCCGAGTGACTTGGAGGTGAACAAACCAGGTTGTTTCAACATAAACTATCCTCCAGTGAATGATGCTGGCATGTCGTTCATATACGAGACTACTCTCTCAAATGACTCCCCACTTGACTTTTTGGGAGGATCAATGACGAACTTTTCAAGGACTGGACCAGTTGAAACCTTTGGTTCTGTTGAAAATTTGTCCCTGGATGACTTCTATTAA 1050 0.4714 MMMDQRQREKLLHKTEACAFVAGVAADLRPVAAPGDITNTNNVNSTTTNVSQSHGSGRIHDANHLGLVAAVTNLGTVHRKKRLPRQRRSNITTSTNTPALFLQMHHSDNTLPSKEYDPNLASSTPSASSLVPPSSLQSVKPSTTLRLAAREIDHTNLRFLFKKELKNSDVNSLRRMVLPKKAAESFLPALESKEGILLNMDDKDGTHAWSFKYRFWPNNNSRMYVLENTGDFVRTHGLRFGDTIMIYQDIENNNYVIQARKASEEDEFVEQNSEIMNDMFPSDLEVNKPGCFNINYPPVNDAGMSFIYETTLSNDSPLDFLGGSMTNFSRTGPVETFGSVENLSLDDFY 349
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu6g03659 349 CDD B3_DNA 159 261 IPR003340 GO:0003677
Vimu6g03659 349 Gene3D - 157 275 IPR015300 -
Vimu6g03659 349 SMART B3_2 161 263 IPR003340 GO:0003677
Vimu6g03659 349 Pfam B3 DNA binding domain 161 262 IPR003340 GO:0003677
Vimu6g03659 349 ProSiteProfiles B3 DNA-binding domain profile. 161 263 IPR003340 GO:0003677
Vimu6g03659 349 PANTHER B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR ABI3 80 274 IPR044800 GO:0003700
Vimu6g03659 349 SUPERFAMILY DNA-binding pseudobarrel domain 159 260 IPR015300 -
Vimu6g03659 349 MobiDBLite consensus disorder prediction 111 138 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu6g03659 Vimu-Chr6 34347349 34350491 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu6g03659 44 349 B3 DNA Binding Superfamily AT3G26790 45.588 5.14e-82 250
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Vimu6g03659 B3 3.4e-16 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu6g03659 K09287 - gmx:100783961 449.899
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu6g03659 6 34347349 34350491 Vimu6g03659 6 34347349 34350491 ECH