Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu6g03651 ATGTTGCCCTGCGATTACTGTCACACCAAACCCGCCTTACTCTTCTGCCGACCCGACTCTGCCAAACTCTGTCTCCTCTGCGACCACCACGTCCACACCGCTAACGCTCTCTCCCTAAAGCACGTCCGCTTCCAGATTTGCGACACCTGCAACACCGACACCGCCACCGTCCGCTGCTCTGCCCACAATCTCATCCTCTGCCACGCCTGCGACCTCGACGCTCACGCCCACGCCCCGGCCTCCCTCCACCACCGCCACCGCCTCCTTGGCCTCTCTGGCTGCCCCTCCCTCCACCAGATTGCCACCGCCCTTGGCCTTGATCTCCGCCTGCGCCACGCCAACTGCCGCGACGAGGTCTACCAGCAGGTCCTCGAAGTCGCGCGCACGAGGAACGAGAACGAGTTTGCGCGTTCCGAGACTGAGGAATTCAGGTTGGAGTCTGAAAATGACGTCGTCGACGAGATGTTGCTGCAGCAGACGCCGTTCACGTCCTTGCTCGGGATGCCTGATTCCCAATCTGAATTCCATGCCGCCAAAACTAACGATAACGGTTACGGAGCCCAAGTTGGAGATCTTCTCTGGAATTTTGATCCCAACTATCAGCCTCCTCAGGTGTGGGATTTTGAATTACAGAAATCAAGAGGTTGTGATGAACCAGGAGTGGTGACATTTGATGGTCTAGAAGTTCCAAAATTATTTCAGGATGTGCACAATATGAATTACTCGACCACTGGTGATGATATTCTATCAAGAAATCTGCATCCATATCATTTAAAATCCGCAGATGGAATCATACTTCTCATTCCCAAGTGCCAGATGATGCGTAGAGTATATGATATAAAGTCCCATTATGATTTGGCCTTTCTCATTCATTTCAACCAATCGGATCAGTCATCATCAAGCCACGCAAAGAAGAAAGAAGAAAGCAACAAGAAAGCCAGAGGTGGGTTATCATCAGAGTCCAAATTGTTAGAATCAATACCGTATAGTGACACCAACAATGTGGTAGTCATGGAGCATCTTGTGGGTGGGAATGCAAATGTTAGCACCTTAAAAGCCAGGGTTAGCGTGGAAGAGTACGATAAACACATTCGCTATGAATCAAGAAAGGCCAGGGCTGATACTAGAAAGAGGGTGAGAGGGAGATTTGTGAAGGCAAGTGATGTTCAAGCAGGATGA 1179 0.5064 MLPCDYCHTKPALLFCRPDSAKLCLLCDHHVHTANALSLKHVRFQICDTCNTDTATVRCSAHNLILCHACDLDAHAHAPASLHHRHRLLGLSGCPSLHQIATALGLDLRLRHANCRDEVYQQVLEVARTRNENEFARSETEEFRLESENDVVDEMLLQQTPFTSLLGMPDSQSEFHAAKTNDNGYGAQVGDLLWNFDPNYQPPQVWDFELQKSRGCDEPGVVTFDGLEVPKLFQDVHNMNYSTTGDDILSRNLHPYHLKSADGIILLIPKCQMMRRVYDIKSHYDLAFLIHFNQSDQSSSSHAKKKEESNKKARGGLSSESKLLESIPYSDTNNVVVMEHLVGGNANVSTLKARVSVEEYDKHIRYESRKARADTRKRVRGRFVKASDVQAG 392
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu6g03651 392 MobiDBLite consensus disorder prediction 299 319 - -
Vimu6g03651 392 Pfam CCT motif 360 386 IPR010402 GO:0005515
Vimu6g03651 392 CDD Bbox1_BBX-like 3 46 - -
Vimu6g03651 392 ProSiteProfiles CCT domain profile. 344 386 IPR010402 GO:0005515
Vimu6g03651 392 ProSiteProfiles Zinc finger B-box type profile. 42 91 IPR000315 GO:0008270
Vimu6g03651 392 SMART bboxneu5 1 46 IPR000315 GO:0008270
Vimu6g03651 392 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 10 3 387 - -
Vimu6g03651 392 Coils Coil 126 146 - -
Vimu6g03651 392 MobiDBLite consensus disorder prediction 300 315 - -
Vimu6g03651 392 ProSiteProfiles Zinc finger B-box type profile. 1 46 IPR000315 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu6g03651 Vimu-Chr6 34229377 34232681 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu6g03651 1 388 C2C2-CO-like Transcription Factor Family AT2G33500 30.716 1.38e-47 165
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-CO-like Vimu6g03651 CCT 3.2e-10 CL0281
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu6g03651 - - vum:124830018 605.52
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu6g03651 6 34229377 34232681 Vimu6g03651 6 34229377 34232681 ECH