Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu6g03641 ATGGCAGACCCAACGGCCATGTATGACTTCCTGAAGCAGCCCACAAACGGTGCCAACACTATCACCACCACCACCACCACCACCACCACCACCCCCACTGCATCCACCACACGCACCTTCCAATGCCATTTCTGCCACCGCAAGTTCTACACCTCGCAAGCCCTCGGCGGCCACCAAAACGCACACAAGCTGGAGCGAGCAGCCGCCAGGAGACAAACCAACGGGCTTCTCCCGCCGCCCCCGCTGCCGCTGGAGCCTTCCCTCAAGCAAACCGAGCCCAGGCCCAGGCCCATGCTGGAGCCACTGGAGCCCTCCACCGGACTCTTCTTCCATCCTCCCTACTGGCTCGATGTGGAGCCCCTGCAGTTCCAAACCACCCACCCTTACGTGACAGCCGCAACCCTCCCCGTTCCGTTCCACGCCGCGTCTTCCGCCGTACCCCAACAACAACAACAACAACAAGTCCTTTCCCACAATGTGGACGGTTCCGACCACGTGAACCTGGACCTGACTCTCCGCTTGTGA 525 0.6152 MADPTAMYDFLKQPTNGANTITTTTTTTTTTPTASTTRTFQCHFCHRKFYTSQALGGHQNAHKLERAAARRQTNGLLPPPPLPLEPSLKQTEPRPRPMLEPLEPSTGLFFHPPYWLDVEPLQFQTTHPYVTAATLPVPFHAASSAVPQQQQQQQVLSHNVDGSDHVNLDLTLRL 174
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu6g03641 174 ProSitePatterns Zinc finger C2H2 type domain signature. 42 62 IPR013087 -
Vimu6g03641 174 PANTHER C2H2 AND C2HC ZINC FINGERS SUPERFAMILY PROTEIN 21 74 IPR044246 GO:0009788
Vimu6g03641 174 SUPERFAMILY beta-beta-alpha zinc fingers 37 67 IPR036236 -
Vimu6g03641 174 Gene3D Classic Zinc Finger 16 77 - -
Vimu6g03641 174 MobiDBLite consensus disorder prediction 73 96 - -
Vimu6g03641 174 ProSiteProfiles Zinc finger C2H2 type domain profile. 40 67 IPR013087 -
Vimu6g03641 174 MobiDBLite consensus disorder prediction 76 90 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu6g03641 35 82 C2H2 Transcription Factor Family AT5G14010 64.583 8.44e-15 66.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Vimu6g03641 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu6g03641 - - vra:106758350 283.493