Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu6g03635 ATGGAAGTGTTTAAGTCAGTTGGAGGCAAGACCTATAAGCTCCCTGTTGGCTACAGGTTCGACCCCACCGATGAAATTCTTGCAGGCTACTACCTCAGGAAGAGGATCATGGCACAATCACTCCCCAATGACCTCATCCAAGACTATGATGTTCACCAGACTGAGCCTTGGGAACTCCCAGGAGGTGGGAAGCACATGAATTGGCAGAGGTTTTTCTTCTACGATGTGAGGAGCCGTGTGTTAGGAAACCCTGACAAGAGAGATGATGGAAAAGGACAATGGGAAATGGTAGAGAAAGATGAAGAGGTTGGGTTATCTGACGAACAAGTGATTGGAAAGAAGAGTGTTCTGGTTTTCTGGAAAGCCAAGGGTAGCTCTCTTGCCAAAACAAAATGGGTGATGCATGAGTTTCGTCTTGCCCTAAAGTCAAATCCATCAAAGATGTCAGCCTTGGCTGTGTGCCGCATATTCGAGAGGAAAAATTCAAAGAGGGCAAAGAAAGCAAGAGTGTGTGAAGGGGAGAGTTCAAACAGGAGCAATATTGAAGGAGGTATGGATGTCATTGATTTCACAGTGGAGTGTGGTGGCACTGAGACTGGTCCTCCTCCCTCTCCTGGGACCCCCTAG 627 0.4753 MEVFKSVGGKTYKLPVGYRFDPTDEILAGYYLRKRIMAQSLPNDLIQDYDVHQTEPWELPGGGKHMNWQRFFFYDVRSRVLGNPDKRDDGKGQWEMVEKDEEVGLSDEQVIGKKSVLVFWKAKGSSLAKTKWVMHEFRLALKSNPSKMSALAVCRIFERKNSKRAKKARVCEGESSNRSNIEGGMDVIDFTVECGGTETGPPPSPGTP 208
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu6g03635 208 Gene3D NAC domain 23 165 IPR036093 GO:0003677|GO:0006355
Vimu6g03635 208 ProSiteProfiles NAC domain profile. 14 159 IPR003441 GO:0003677|GO:0006355
Vimu6g03635 208 Pfam No apical meristem (NAM) protein 15 139 IPR003441 GO:0003677|GO:0006355
Vimu6g03635 208 SUPERFAMILY NAC domain 10 158 IPR036093 GO:0003677|GO:0006355
Vimu6g03635 208 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 13 167 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu6g03635 14 164 NAC Transcription Factor Family AT2G24430 37.179 1.31e-27 104
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Vimu6g03635 NAM 1.5e-23 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu6g03635 - - vum:124846897 358.607