Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu6g03631 ATGGGTAGTAGCTGCCCTTGTTTCGGGCCGTGGAAGAAGGGCAAAGAGAAGAGTGCCAAGGGACGGGATGAGGAAAACAAGAATCTCAAATCTGTAAAGAACACCAATGATGTTCCTGAAAGTTCTCCAGGGAATGGACCAGAAGAAAACCCAGTAGAGGAGGGTGAAAGTTCTCATAAGGCCCGGATATTTACCTTCCGAGAGCTTGCAACAGCAACAAAAAGTTTTAGAGATGAAACCTTTATTGGACAAGGTGGATTTGGCATTGTTTACAAGGGAATAATTGAGGAAAATCAGGTTGTAGCTGTTAAAAGACTTGATACTACAGGTGTTCAAGGGGAGAAAGAATTTCTGGTGGAAGTTCTCATGCTTTCCCTTCTACGCCATCCCAACCTTGTTAGTATGATTGGTTACTGTGCAGAAGGGGATCAACGTCTTCTTGTGTATGAGTACATGGCTTTGGGATCCCTAGAATCTCATCTTCATGTCTCAGCGGAATGCTATCTTTACTCTTGGTTTCTCCAAGTTTTCACTGCACGTCCAATGCTGAGAGACAAAAGGAGTTTCCCAAGATTGGTAGATCCACGGCTTCAAGGGAAGTACCCAGGATCATGTCTATCGATGGTGATTGAATTGACAGCCATGTGTCTTCGTGAAGAGCCACGTCAACGGCCTAATGCAGGTGATATAGTGGCAGCTCTGGAATTCTTGTCATCCAAGCAATATTCCCCGAAAGTGTTCAACACAGTCAACAACACAACTGAGATGGAGAGTGGAGAGTCCCCAAATGAAACAACAGCCATTTTGCCAAAAGAATCACAGAGAGAGAGAGCTGTTGCAGAAGCCAAGCTGTGGGGGGAGACATGGAGGCAGAGACGACAAAGTGAGCAAAACAGTCCTAAGGAACCCCACATAGGGTTGTGA 924 0.4545 MGSSCPCFGPWKKGKEKSAKGRDEENKNLKSVKNTNDVPESSPGNGPEENPVEEGESSHKARIFTFRELATATKSFRDETFIGQGGFGIVYKGIIEENQVVAVKRLDTTGVQGEKEFLVEVLMLSLLRHPNLVSMIGYCAEGDQRLLVYEYMALGSLESHLHVSAECYLYSWFLQVFTARPMLRDKRSFPRLVDPRLQGKYPGSCLSMVIELTAMCLREEPRQRPNAGDIVAALEFLSSKQYSPKVFNTVNNTTEMESGESPNETTAILPKESQRERAVAEAKLWGETWRQRRQSEQNSPKEPHIGL 307
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu6g03631 307 MobiDBLite consensus disorder prediction 1 59 - -
Vimu6g03631 307 MobiDBLite consensus disorder prediction 270 299 - -
Vimu6g03631 307 MobiDBLite consensus disorder prediction 253 269 - -
Vimu6g03631 307 FunFam probable serine/threonine-protein kinase RLCKVII 48 151 - -
Vimu6g03631 307 Gene3D Phosphorylase Kinase; domain 1 46 149 - -
Vimu6g03631 307 MobiDBLite consensus disorder prediction 253 307 - -
Vimu6g03631 307 ProSitePatterns Protein kinases ATP-binding region signature. 82 104 IPR017441 GO:0005524
Vimu6g03631 307 Gene3D Transferase(Phosphotransferase) domain 1 150 259 - -
Vimu6g03631 307 SUPERFAMILY Protein kinase-like (PK-like) 171 240 IPR011009 -
Vimu6g03631 307 MobiDBLite consensus disorder prediction 13 31 - -
Vimu6g03631 307 SUPERFAMILY Protein kinase-like (PK-like) 54 176 IPR011009 -
Vimu6g03631 307 ProSiteProfiles Protein kinase domain profile. 76 307 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu6g03631 307 PANTHER OS07G0668900 PROTEIN 178 245 - -
Vimu6g03631 307 Pfam Protein tyrosine and serine/threonine kinase 81 175 IPR001245 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu6g03631 Vimu-Chr6 33983757 33987767 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu6g03631 179 290 Glycoside Hydrolase AT3G07070 35.088 1.30e-12 65.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-1 Vimu6g03631 PK_Tyr_Ser-Thr 3.3e-16 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu6g03631 - K13430 gmx:100809298 233.032