Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu6g03620 ATGATCAATTCACTTTGTGGAACCCTCAAGAGTGAGAACAACTCTAGAACCAAACTCCAACCCACATCTTCAAATGACTCAAAGAAAAATAATGCCACTCAATCCTCTGGTGATCTTGACCAAACTGGCCTAACCCCACCAAGTTTAAACCTTCCTGCACTCAAATTTGACTTGGATGGAGATGTGGAAGTTCAGTCACCAGATAATTCACTCTGGGAATCCTTTTTCGCTGACCAACTGGATGCTGATTTCATGATCTCTTCCCCTGTCAGAAACGTTCCCTCTCCGCAACTCTCTTCTTACAATTGCAGCTATAACTATGCTCATGGAATGCAAGGTCAGAGTCTCTCAGGGTCTTCCCCACCAAAGTTTTCATCTTCCCATATTGGAGCCTTCAATAGCAGCCACAAAGGGAAAGGACTTAGCCCTCTCCACAGGGTCTTCAACTCACCAAACAATCAGTACATGCAGCATGTTGAAAACCTTTCCCTTCCAGCCATAGAAGAATTCTTAGAGGACTATCAAGGCTATTCATCAACCAAGGTGTCTTCTGACATTGCAACTTCATCTGAATGCTTTGACTTGTCTACTCAAATCCCTTCATCCCTATTGGATAGCTTAACACTGCCCGATTCCTCAAGGTACCACGGTTCAGTCGATGAAGAATCCTCGGTGCACGGTGGTGGCTCTTCTCAACTTTACCAAGAGAGTGACATCTATCATCAGATGGGGTCCATGGCTAGTGCATCCCTCTCGCAGGCTCTACAACAAGAACGCTACCAAGAGAAATGGCAAAAGCAGCAAGCACTCCATCAACAACAACAACAACGCCAGCAAGACAATCTCATGGTGCCTATTCCAATTGGAATCGAGCAGGAGCAAGACAGCGGCCTTCAACTGGTGCACCTGCTTCTGGCCTGCGCAGAGGCTGTGGCTAAAGAGGAATACATGTTAGCAAGAAGGTACCTCCACCACCTCAACCGAGTCGTCACTCCCTTAGGCGACTCCATGCAGCGCGTGGCGGCATGCTTCACCGATTCGCTCAGCGCCAGGCTCAATGCCACCCTCAGCCCGAAACCCTCCAAATCCCTCAGCCCCTCAAACTCCATGGAAGTCCTCAAAATCTATCAGATCGTGTACCAGGCCTGCCCTTACGTCAAGTTCGCCCATTTCACCGCCAACCAGGCCATCTTCGAAGCCTTCGAGACCGAAGAGCGTGTTCACGTCATCGACCTCGACATCCTCCAGGGCTACCAATGGCCCGCCTTCATGCAGGCCCTCGCCGCCCGCCCCACCACCGCTCCCTTCCTCCGCATTACCGGAGTTGGCCCCTCTATCGACGCCGTCCGCGAAACCGGCCGCTGCCTTACCGAGCTCGCCCACTCCCTGCGCATCCCCTTTGAATTCCACGCCGTCGGAGAACAGCTCGAGGATCTCAAACCCCACATGCTGCACCGCCGTGTCGGGGAGGCTCTCGCTGTTAATGCAGTCAACCGCCTCCACCGCGTGCCCGGGAATCATCTGGGGAACCTTCTCACCATGATACGCGACCAGGCACCGAACATAGTGACCCTAGTGGAGCAAGAGGCGAGCCACAACGGACCCTACTTTCTGGGCCGGTTTCTCGAGGCGTTGCACTACTACTCCGCGATCTTTGACTCGCTGGACGCAACGTTTCCGGCGGATTCGGCGCAGCGGGCGAAGGTGGAGCAGTACATATTCGCGCCGGAGATACGGAATATCGTATCGTGCGAGGGCCCGGAGAGGTTTGAGCGGCACGAGAGGCTGGAGAAGTGGCGGAAGATAATGGAGGGAAAGGGGTTTAAGAGCGTGGCACTGAGTCCAAACGCGGTGACTCAGTCGAAGATTTTGCTCGGGTTGTACTCGTGCGAGGGGTATAGATTGACGGAGGATAAGGGCTGCTTACTGCTTGGGTGGCAGGATAGGGCCATCGTTGCGGCGTCTGCATGGCGGTGTTGA 1980 0.5333 MINSLCGTLKSENNSRTKLQPTSSNDSKKNNATQSSGDLDQTGLTPPSLNLPALKFDLDGDVEVQSPDNSLWESFFADQLDADFMISSPVRNVPSPQLSSYNCSYNYAHGMQGQSLSGSSPPKFSSSHIGAFNSSHKGKGLSPLHRVFNSPNNQYMQHVENLSLPAIEEFLEDYQGYSSTKVSSDIATSSECFDLSTQIPSSLLDSLTLPDSSRYHGSVDEESSVHGGGSSQLYQESDIYHQMGSMASASLSQALQQERYQEKWQKQQALHQQQQQRQQDNLMVPIPIGIEQEQDSGLQLVHLLLACAEAVAKEEYMLARRYLHHLNRVVTPLGDSMQRVAACFTDSLSARLNATLSPKPSKSLSPSNSMEVLKIYQIVYQACPYVKFAHFTANQAIFEAFETEERVHVIDLDILQGYQWPAFMQALAARPTTAPFLRITGVGPSIDAVRETGRCLTELAHSLRIPFEFHAVGEQLEDLKPHMLHRRVGEALAVNAVNRLHRVPGNHLGNLLTMIRDQAPNIVTLVEQEASHNGPYFLGRFLEALHYYSAIFDSLDATFPADSAQRAKVEQYIFAPEIRNIVSCEGPERFERHERLEKWRKIMEGKGFKSVALSPNAVTQSKILLGLYSCEGYRLTEDKGCLLLGWQDRAIVAASAWRC 659
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu6g03620 659 ProSiteProfiles GRAS family profile. 291 658 IPR005202 -
Vimu6g03620 659 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 253 653 IPR005202 -
Vimu6g03620 659 Pfam GRAS domain family 300 658 IPR005202 -
Vimu6g03620 659 MobiDBLite consensus disorder prediction 10 48 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu6g03620 Vimu-Chr6 33855947 33858027 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu6g03620 265 659 GRAS Transcription Factor Family AT1G66350 41.646 1.12e-99 313
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Vimu6g03620 GRAS 4.2e-131 CL0063
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu6g03620 - - gmx:100805039 1076.23