Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu6g03609 ATGGATCCCAAGAGCTCAAAGCAGCCACTGGCACAGGAGGTGGTACCAAACTTTCTTAGCCTTCCCCAACAACAATCGCCACCACAACAACAAGGTAGCAATAGCAACATGGGAGAGAACAAGCCAGGGGAGATGAAGGATTTCCAGATAGTGGTCAGTGAGAAGGATGAGAGCAAGAAGCAGTTGGCTCCCAAGAGGAGTTCGAACAAGGACAGACACACCAAGGTTGAAGGGAGGGGACGGAGGATAAGGATGCCTGCTCTGTGTGCAGCTAGAATCTTTCAGTTGACCAGAGAATTGGGTCACAAATCTGATGGGGAAACGATCCAGTGGCTTCTTCAGCAGGCTGAGCCATCTATAATAGCTGCTACTGGGACAGGTACAATCCCAGCATCTGCTTTGGCTGCTGCTGGGAACTCAGTTTCACCACAAGGGGCCTCTCTTTCATCAGGGTTGCACCATAAGATTGATGAATTGGGAGGGTCCAATATGGGGTCAGGTAGCAGTAGGACCAGTTGGCAAATGGTTGGGGGGAATTTGGGGAGACCCCATGTGGCCACGGGACTATGGCCCCCCCATGTCAGTGGATTTGGATTTCAGACATCCTCTGGTCCATCTAATGCCGCTCTAGGCACTGAGAGTTCAAATTACCTGCAAAAGATTGCCTTCCCTGGCTTTGACTTGCCTGCTGCTGCCACCAACATGGGTCACATGAGTTTCACCTCAATATTGGGTGCTGCGGGTACTCCGCAGATGCCTGGTTTGGAGCTGGGCTTGTCCCAGGATGGCCATATTGGAGTCTTGAATCCACAGGCCTTGAGCCAGATTTATCAGCAGATGGGTCAGGCTAGAGTGCAGCAGCAGCAGCAGCATCAACAACAACATCAGCAAACTCCTGCAAAGGATGATTCTCAAGGCTCAGGACAGTAG 930 0.5151 MDPKSSKQPLAQEVVPNFLSLPQQQSPPQQQGSNSNMGENKPGEMKDFQIVVSEKDESKKQLAPKRSSNKDRHTKVEGRGRRIRMPALCAARIFQLTRELGHKSDGETIQWLLQQAEPSIIAATGTGTIPASALAAAGNSVSPQGASLSSGLHHKIDELGGSNMGSGSSRTSWQMVGGNLGRPHVATGLWPPHVSGFGFQTSSGPSNAALGTESSNYLQKIAFPGFDLPAAATNMGHMSFTSILGAAGTPQMPGLELGLSQDGHIGVLNPQALSQIYQQMGQARVQQQQQHQQQHQQTPAKDDSQGSGQ 309
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu6g03609 309 ProSiteProfiles TCP domain profile. 69 123 IPR017887 -
Vimu6g03609 309 MobiDBLite consensus disorder prediction 1 79 - -
Vimu6g03609 309 Pfam TCP family transcription factor 68 163 IPR017887 -
Vimu6g03609 309 MobiDBLite consensus disorder prediction 48 79 - -
Vimu6g03609 309 MobiDBLite consensus disorder prediction 10 40 - -
Vimu6g03609 309 MobiDBLite consensus disorder prediction 279 309 - -
Vimu6g03609 309 PANTHER TRANSCRIPTION FACTOR TCP4-RELATED 23 285 IPR005333 GO:0003700
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu6g03609 Vimu-Chr6 33701749 33707162 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu6g03609 1 309 TCP Transcription Factor Family AT3G27010 54.054 1.29e-84 255
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TCP Vimu6g03609 TCP 1.7e-30 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu6g03609 - - vun:114191990 537.724