Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu6g03599 ATGTTAACTTGTGCTGATTTGAATGCTCTCTTAGCTAAAGGTGTTTTGTATCTAGAAAAACCAAAATTCTTTCTTAGCCCAACCAAAATACAAGCCTTGAAAGTGAATGTATTCATTGTGGTAGAAATGAAAGGCAAAGTTGAATTGTGTGACCTTGTGTTGCTAGAAAGAAAACGTGTAGCCTCCATAAGAATAGTCAACACCACGCACTGGCCGGTTCGTTCCCCTCAAACCGGCTCAACATGTGCCGGTCGTGATGAAAAACTCGCTCGTCAGAATCGGAAGCGTCGAAGCCTTCGAACCGAGACCGAGTCGTCTCTCGATCATGTCCAAATCCAACGAAGATCTGAGGATTCTCCAGTTGCGTTGCTTGAAGATTTTTGCATAGATCTAAGAAGCTGGCCTCATGACCATGCCACCGTCTTTGTTGCCAAATTCTTTGGCCACGCTGGCCTCATGTCCTTCATTTCCAACGTTCGAGAAAATCAACGACCTTCCTTGTTGTTCGAAGCATGCGGGAGAACGGTCAACCCCGTCAAAGGTGCAGTGGGTCTTCTCTGGACCAGAAATTGGCACGTCTACCAGGCGGCCGTCATGACCGTGCTTCGCGAGGGTACGCTCAGGCCCATGTCGGAGCTCATGAGACTCGCCTCTCCCGTTGCCGCCACCGACGAGACATCAGAAGTTGCATGCTCCGACATTTGGAGAATTCGAGACCCAAACCCAACTTATGGATTTACAAACACCAGATCCCATACCAAAGAGCCGACAAAGCTTCAGGCGATGTCAAATCTCGATCTTCGACTGACGCCGATTTTCCTACAAAAGAAGGTTGAAAACTGGTGGTCGGTGTCTCAAGCAGATTCTGTGGTGTACCAGACAGAGAAAAAATTAAAAGAGCTTGGAGACAAGGTCCTTGGACCTGTGAAAGAGAAGGTTGAAGCAAAACTAGGAGAACTTAAAGACGCAATTTTAGGGGTTCGACACAAGCTATTAAGGATGCCATGGCTTCCCTCAATCAGGAAGTTATGCAGCTTTGCGTCGCCCTCCATTGAAAGGTCTTACCGTGTTCCTCTAAAGCTGCCACTGTTGGCAGTGATGTGCTTCTTACCTCTGGATTTCTGGTTTTTAATCTGCAAGCGCAATACCATTTGGAATATTGTTGAGATTGATGTTGTGATGTTCATAGGAATGGTAGATGCATTAGAAATTATGGCAGCAATTTGTATGAGAGACATGCCCATGTGTACGTGGGGATGA 1260 0.4659 MLTCADLNALLAKGVLYLEKPKFFLSPTKIQALKVNVFIVVEMKGKVELCDLVLLERKRVASIRIVNTTHWPVRSPQTGSTCAGRDEKLARQNRKRRSLRTETESSLDHVQIQRRSEDSPVALLEDFCIDLRSWPHDHATVFVAKFFGHAGLMSFISNVRENQRPSLLFEACGRTVNPVKGAVGLLWTRNWHVYQAAVMTVLREGTLRPMSELMRLASPVAATDETSEVACSDIWRIRDPNPTYGFTNTRSHTKEPTKLQAMSNLDLRLTPIFLQKKVENWWSVSQADSVVYQTEKKLKELGDKVLGPVKEKVEAKLGELKDAILGVRHKLLRMPWLPSIRKLCSFASPSIERSYRVPLKLPLLAVMCFLPLDFWFLICKRNTIWNIVEIDVVMFIGMVDALEIMAAICMRDMPMCTWG 419
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu6g03599 419 Gene3D - 276 329 IPR029048 -
Vimu6g03599 419 PANTHER LOB DOMAIN-CONTAINING PROTEIN 38 137 258 - -
Vimu6g03599 419 Pfam Lateral organ boundaries (LOB) domain 137 199 IPR004883 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu6g03599 Vimu-Chr6 33515414 33521282 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu6g03599 136 270 AS2 family AT4G37540 56.463 2.99e-41 144
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Vimu6g03599 LOB 4.7e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu6g03599 - - gmx:100816480 195.282