Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu6g03598 ATGGAGAATTATAGCATGTTGTTCCCTTGTCCGAATTCTTCCAGCTACCCCATTTCAAAGAGTGTTGTGGGAACCTCTCAGCATGATTTTGGTGGTCAAAGCTCCAATGCATTCCTAGGTCTAAGGCCTAGTAATGAGAGTAGTGGTAGTGATCATGAAAAGAGAGGAGAAGGTGGTAGAGATGCTTCCATGTTAATGTCTCAGATCACTGGTGGCATTAATGTGAGTGATGAGTTAGGTGGTTTGGGAAATGGTAGTAGTAATGGAAAAAAGAAAGGGGAGAAAAAGGTTCGAAAGCCTAGATATGCTTTCCAAACCAGGAGCCAGGTTGATATTCTTGATGATGGCTATAGGTGGAGGAAGTATGGCCAAAAGGCTGTCAAAAACAACAAGTTTCCGAGGAGTTACTACAGGTGCACGCATCAAGGGTGCAATGTGAAGAAGCAAGTCCAACGCCTAACGAAAGACGAAGGAGTAGTGGTGACTACTTATGAAGGAGTCCACACTCACCCAATTGAGAAGACAACAGATAACTTTGAACACATTTTGAGTCAGATGCAAATATACACTCCCTTTTGA 579 0.4301 MENYSMLFPCPNSSSYPISKSVVGTSQHDFGGQSSNAFLGLRPSNESSGSDHEKRGEGGRDASMLMSQITGGINVSDELGGLGNGSSNGKKKGEKKVRKPRYAFQTRSQVDILDDGYRWRKYGQKAVKNNKFPRSYYRCTHQGCNVKKQVQRLTKDEGVVVTTYEGVHTHPIEKTTDNFEHILSQMQIYTPF 192
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu6g03598 192 MobiDBLite consensus disorder prediction 76 100 - -
Vimu6g03598 192 MobiDBLite consensus disorder prediction 27 59 - -
Vimu6g03598 192 Pfam WRKY DNA -binding domain 114 171 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vimu6g03598 192 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 24 175 IPR044810 GO:0003700
Vimu6g03598 192 MobiDBLite consensus disorder prediction 27 46 - -
Vimu6g03598 192 ProSiteProfiles WRKY domain profile. 108 173 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vimu6g03598 192 Gene3D WRKY domain 98 172 IPR036576 GO:0003700|GO:0006355|GO:0043565
Vimu6g03598 192 SMART WRKY_cls 113 172 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vimu6g03598 192 FunFam WRKY transcription factor 57 99 173 - -
Vimu6g03598 192 SUPERFAMILY WRKY DNA-binding domain 105 172 IPR036576 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu6g03598 Vimu-Chr6 33486330 33488094 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu6g03598 101 192 WRKY Transcription Factor Family AT5G13080 88.043 9.09e-59 179
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Vimu6g03598 WRKY 1.8e-26 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu6g03598 - - pvu:PHAVU_001G088200g 348.206