Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu6g03595 ATGGATTGGGACGGGAAAGAGTTTGCTTGGGATCCACGTGGGCTGGAGCTGGCTAATGGTGAAGGACAGAGGAATGAAGCTGCTTCAGTGGATTTGAGGCTTGGTGAGGAAAAATCACTCCCAGATGTTGCTAAGGACCCTAGAGAGTCAAAAACTGTGTCTTCACCATCTGGGTCATCAAAAAGATCCCGCCTTCAGAATGGATCACAGAATATGTGTTGTTCTGTTGATGGATGCATCTCTGACCTCAGTGATTGCAGAGAGTATCATAGGCGCCATAGGGTCTGTGAAAAGCACTCCAAGACCCCAGTTGTGTTGGTGGGGGGCAAACAACAACGGTTCTGCCAGCAATGTAGCAGGTTTCACTCACTTGGGGAGTTTGATGAGGTTAAGAGGAGTTGTAGGAAAAGGCTTGATGGGCATAACAGGCGCAGGAGGAAACCTCAGCCTCCCTCTCTTTTCATGGCTGCTGAGAAATTCATGTACAATTACAAAGGACCTAGAATCCTGCATTTTGGCAGCCCGGAGACTTATGTCAACCCTATTATGAGGAGTATGTGGTCTGCCACTGCAAAAACTGGAGCTGAATCTGGTTATGATCCACCTCGACTGTTATACAGAATTGACAAGCACAAGCAAGACAAGGGACATCCTCTGTGGCAAGAAAATGACCCTATTGTAGGCAATGCTAATGGAGCAATACTTGGAGCTCCCATTTGTCAGCCTATTCATGGCACCATCACCCCATCAACCGGTGGTGGAAAGAGCAGCCGAAAGCACTCTTCAGATGCAAAACCTGGATCCTTTGACTCAGGTTGTGCTCTCTATCTTCTGTCAACACTTCAATCACAGAGTCCAGAGTCGAGTATGGTGCAATCTAGCATTACATGTCCAATGCAATCTCCATCAGGATCTGTGCATTTTGATACTGTCAATGAATATGCATACTCAGAAACGGAAAAAGATAAGCCCAGTGGTCAAGTATTGGTTCTTGATAACACAGCCAACCTTCATTACAATGGAATGCTGCAAATGGGGTTAGATGGTTTGGTTGAAAATGACGACCCACTTACACTTCCCTTCTTGTGGGAGTAG 1095 0.4639 MDWDGKEFAWDPRGLELANGEGQRNEAASVDLRLGEEKSLPDVAKDPRESKTVSSPSGSSKRSRLQNGSQNMCCSVDGCISDLSDCREYHRRHRVCEKHSKTPVVLVGGKQQRFCQQCSRFHSLGEFDEVKRSCRKRLDGHNRRRRKPQPPSLFMAAEKFMYNYKGPRILHFGSPETYVNPIMRSMWSATAKTGAESGYDPPRLLYRIDKHKQDKGHPLWQENDPIVGNANGAILGAPICQPIHGTITPSTGGGKSSRKHSSDAKPGSFDSGCALYLLSTLQSQSPESSMVQSSITCPMQSPSGSVHFDTVNEYAYSETEKDKPSGQVLVLDNTANLHYNGMLQMGLDGLVENDDPLTLPFLWE 364
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu6g03595 364 SUPERFAMILY SBT domain 72 153 IPR036893 GO:0003677|GO:0005634
Vimu6g03595 364 ProSiteProfiles Zinc finger SBP-type profile. 71 148 IPR004333 GO:0003677
Vimu6g03595 364 MobiDBLite consensus disorder prediction 14 69 - -
Vimu6g03595 364 Pfam SBP domain 74 147 IPR004333 GO:0003677
Vimu6g03595 364 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 18 300 IPR044817 GO:0003677
Vimu6g03595 364 MobiDBLite consensus disorder prediction 245 266 - -
Vimu6g03595 364 MobiDBLite consensus disorder prediction 30 49 - -
Vimu6g03595 364 MobiDBLite consensus disorder prediction 50 69 - -
Vimu6g03595 364 Gene3D - 65 135 IPR036893 GO:0003677|GO:0005634
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu6g03595 Vimu-Chr6 33440471 33442970 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu6g03595 74 172 SBP-box Gene Family AT5G50670 66.667 7.58e-42 148
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SBP Vimu6g03595 SBP 4.2e-30 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu6g03595 - - gmx:100798317 661.759
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu6g03595 6 33440471 33442970 Vimu6g03595 6 33440471 33442970 ECH