Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu6g03587 ATGGAAGTGGAGAACAATCACAATCAGCAATTAGGGTTTCCGTTCTGGAAACCGCTCCGTCGCAAGTTCGGGCCGGACTCTCCTTTCTTCGCTCCCGGCAATCTCGAACGAGAACTTCTTGCCAAACAGATTGCTTTGGAATTGACAGAAGAGAAGGAACAGCTTGAGAAATGGATGCAAGAGGAAGAAGGAAGGGAAATCTTTTGTCCCATTGTTGGCTGTGGTGCACGCTTGACTTCAATGGATGACTTTGAGAATCACTATAATGCAAGGCATACTGCATCTTGTTCTGTGTGCTTTAGAGTTTACCCAACGTCTCGGTTGCTCAGCATACATGTATCTGAAGTGCATGATTCTTTCTTTCAGGCAAAAGTTGCACGTGGTTACGATATGGTGTGTAAGTGTAAAGATGATTCATTGTGCTATCACGATACAATTCCTTATAATATTGAATCTTGTGGTTTGAAATTCAAAAGCTACAATCGTAGGCATCAGCATCTGGTTGACAAGCATAAATTTCCCACCTCATTTGAGTTTTTCAAGAAGGCTAAACCTTCAAAGAAACAGAGACTGAAGTCCCAACAAAAAAAAGCTGTTCCTAAGGAGAAGGATGCAGGAATGATGGAAGTGGAAAACGCAACCGTGGATGACCTTGTTTCAGCAGTCTCTAAACTGAGCACTTCTGACTCCACCCCTTCAAATATCAGCTTTGGTCGCCGCAGCAAAGGCTTGTCATTCGTCCCTCGAACTGTTCAGCGCAGAGATCAATCAAACTCAGCAGCATCTGGGACAAAGAGATAA 801 0.437 MEVENNHNQQLGFPFWKPLRRKFGPDSPFFAPGNLERELLAKQIALELTEEKEQLEKWMQEEEGREIFCPIVGCGARLTSMDDFENHYNARHTASCSVCFRVYPTSRLLSIHVSEVHDSFFQAKVARGYDMVCKCKDDSLCYHDTIPYNIESCGLKFKSYNRRHQHLVDKHKFPTSFEFFKKAKPSKKQRLKSQQKKAVPKEKDAGMMEVENATVDDLVSAVSKLSTSDSTPSNISFGRRSKGLSFVPRTVQRRDQSNSAASGTKR 266
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu6g03587 266 MobiDBLite consensus disorder prediction 224 266 - -
Vimu6g03587 266 Coils Coil 41 65 - -
Vimu6g03587 266 MobiDBLite consensus disorder prediction 250 266 - -
Vimu6g03587 266 MobiDBLite consensus disorder prediction 224 240 - -
Vimu6g03587 266 PANTHER UNCHARACTERIZED 10 254 IPR039258 -
Vimu6g03587 266 MobiDBLite consensus disorder prediction 186 207 - -
Vimu6g03587 266 SMART c2h2final6 146 171 IPR013087 -
Vimu6g03587 266 SMART c2h2final6 94 117 IPR013087 -
Vimu6g03587 266 SMART c2h2final6 67 92 IPR013087 -
Vimu6g03587 266 ProSitePatterns Zinc finger C2H2 type domain signature. 69 92 IPR013087 -
Vimu6g03587 266 ProSitePatterns Zinc finger C2H2 type domain signature. 96 117 IPR013087 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu6g03587 10 264 C2H2 Transcription Factor Family AT5G14140 59.551 4.34e-103 299
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Vimu6g03587 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu6g03587 - - gmx:100819557 409.068
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu6g03587 6 33206398 33208350 Vimu6g03587 6 33206398 33208350 ECH