Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu6g03567 TTGTCTACCTCAACAGATCAGTGTTTGTTCGAATGGGAGTTTGGAGAAAGCACCAAAATGAACGACGACAAGATGGAAGAAGTTGAAAGAGAGGAAGAAATAGACCCAGAAAGCAATCCAGTGAATGAGCCACTGCTCAAGAGGAACCGGACACTGTCTTCCAACCCTCTTGCTCTCATTGGAGAAAAAGTTTCCTACATAGAAAGCTTGGATTATGAGATAAATGAGAATGATCTATTCAAGGATGACTGGAGGAGCAGATCAAGAGTTCAAGTGTTGCAGTACATATTCTTGAAATGGTTACTTGCATTCCTTGTTGGACTTCTCACTGGTATTATAGCCACTCTCATCAATCTTGCTATTGAGAACATTGCTGGCTATAAGCTTCTCGCTGTTCTTAAATACATCCACAAAGAAAGGTACTTGTCAGGTTTCCTATATTTCACGAGCATTAATTTCATTTTGACATTTGTTGCTGCTATTCTGTGCGTGTGTTTTGCACCCACAGCAGCAGGACCTGGAATTCCTGAAATCAAAGCTTATCTTAATGGTGTTGATACTCCCAACATGTTTGGTGCTACAACATTGATTGTCAAGATAATTGGAAGCATTGGAGCTGTCTCTGCAGGACTAGATTTGGGAAAAGAAGGACCGTTGGTACACATAGGAAGCTGCATTGCTTCCTTACTAGGCCAGGGAGGCCCTGACAATTACAGGATCAAATGGCGTTGGCTTCGATATTTTAACAATGATCGTGACCGCCGGGATCTTATCACCTGTGGTTCATCTTCGGGAGTTTGTGCAGCTTTCCGGGCTCCAGTGGGTGGAGTTCTCTTTGCTCTTGAAGAGGTGGCAACCTGGTGGAGAAGTGCTCTACTCTGGAGAACCTTTTTTAGCACAGCTGTGGTGGTGGTGGTTCTCAGGGCTTTCATTGAAATCTGCCATTCTGGAAAATGTGGCCTTTTTGGTGAAGGAGGTCTGATTATGTTTGATGTAAGCAATGTCACCGTGAGGTACCATGTTATGGATATTGTCATCGTTGTAGTCATTGGTATCATAGGCGGGGTATTGGGAAGCCTTTACAATCATGTGCTACACAAGATCCTCAGACTCTACAATCTCATCAATCAGAAAGGAAAGATACATAAACTCCTCCTCAGTCTGGCAGTTGCACTCTTCACATCGATGTGCCAGTATGGTCTCCCATTCTTAGCAAAATGTACCCCATGTGATTCATCGATTCCAGAGTCAGCATGCCCCACCAATGGACGATCCGGAAATTTCAAACAATTCAACTGTCCACCTGGCTTCTATAACGATCTGGCCACTCTGCTGCTTACCACTAATGACGATGCTGTTCGAAACATATTCTCAACCAACACCCCTCAAGAATATCAACCCATGTCCCTCCTAATTTTCTTTGTACTATATTGCATATTAGGACTAATTACTTTTGGAATTGCAGTGCCATCTGGGCTTTTCCTCCCAATTATTCTTATGGGCTCAGGTTATGGACGTCTTCTTGGCTTCTATATGGGGCCTCATACAAACATTGACCAAGGGCTGTTTGCCGTACTTGGTGCAGCCTCCCTCATGGCTGGTTCCATGAGGATGACGGTATCCCTTTGTGTGATCTTTCTAGAACTCACCAATAATCTTCTTCTATTACCAATAACAATGATTGTTCTCCTAATAGCCAAAACTGTGGGAGACAGTTTCAACCCAAGTATCTATGAAATTATACTGCACTTGAAAGGCCTCCCTTTCATGGATGCAAATCCCGAGCCATGGATGAGAAATCTCACTGTGGGTGAGCTTGTTGATGTAAAGCCATCAGTGGTTACCCTCCACGGAATAGAAAAGGTATCTACAATAGTAGATGTCTTGAAAAACACTACGCATAATGGCTTTCCTGTTTTGGACGATGGGGTAGTAGTACCACCAGTAGTAGGACATGCCAATGGAGCAACAGAGTTGCATGGATTAGTTTTAAGAGCACATCTCATCCAAGCACTAAAGAAGAAGTGGTTCTTTAAAGAAAGAAGGAGAACAATGGACTGGGAAGTGAGAGAGAAATTTACCTGGGTAGAGCTGGCTGAGAGAGAAGGAAGTATTGAAGGGGTGGCTGTGACCAGCGAGGAAATGGAGATGTTTGTAGATCTACATCCTCTAACCAATACAACTCCCTTTACCGTGCTCGAGAGCATGTCAGTAGCAAAAGCAATGATTCTCTTCAGGCAAGTTGGACTTCGTCATCTGCTTGTAGTTCCCAAGTATCAAGCATCCGGGGTATCCCCAGTAATTGGGATCTTGACCAGGCAAGATCTTCTGGCACACAACATTTTGACAGTCTTTCCTCACCTGGCAAAATCTAAGAGCAGAGGAAAAAGAAATTGA 2397 0.4364 MSTSTDQCLFEWEFGESTKMNDDKMEEVEREEEIDPESNPVNEPLLKRNRTLSSNPLALIGEKVSYIESLDYEINENDLFKDDWRSRSRVQVLQYIFLKWLLAFLVGLLTGIIATLINLAIENIAGYKLLAVLKYIHKERYLSGFLYFTSINFILTFVAAILCVCFAPTAAGPGIPEIKAYLNGVDTPNMFGATTLIVKIIGSIGAVSAGLDLGKEGPLVHIGSCIASLLGQGGPDNYRIKWRWLRYFNNDRDRRDLITCGSSSGVCAAFRAPVGGVLFALEEVATWWRSALLWRTFFSTAVVVVVLRAFIEICHSGKCGLFGEGGLIMFDVSNVTVRYHVMDIVIVVVIGIIGGVLGSLYNHVLHKILRLYNLINQKGKIHKLLLSLAVALFTSMCQYGLPFLAKCTPCDSSIPESACPTNGRSGNFKQFNCPPGFYNDLATLLLTTNDDAVRNIFSTNTPQEYQPMSLLIFFVLYCILGLITFGIAVPSGLFLPIILMGSGYGRLLGFYMGPHTNIDQGLFAVLGAASLMAGSMRMTVSLCVIFLELTNNLLLLPITMIVLLIAKTVGDSFNPSIYEIILHLKGLPFMDANPEPWMRNLTVGELVDVKPSVVTLHGIEKVSTIVDVLKNTTHNGFPVLDDGVVVPPVVGHANGATELHGLVLRAHLIQALKKKWFFKERRRTMDWEVREKFTWVELAEREGSIEGVAVTSEEMEMFVDLHPLTNTTPFTVLESMSVAKAMILFRQVGLRHLLVVPKYQASGVSPVIGILTRQDLLAHNILTVFPHLAKSKSRGKRN 798
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu6g03567 798 PRINTS Plant CLC chloride channel signature 441 457 IPR002251 GO:0005247|GO:0006821|GO:0016020
Vimu6g03567 798 PRINTS Plant CLC chloride channel signature 284 292 IPR002251 GO:0005247|GO:0006821|GO:0016020
Vimu6g03567 798 PRINTS Plant CLC chloride channel signature 316 323 IPR002251 GO:0005247|GO:0006821|GO:0016020
Vimu6g03567 798 PRINTS Plant CLC chloride channel signature 298 308 IPR002251 GO:0005247|GO:0006821|GO:0016020
Vimu6g03567 798 PRINTS Plant CLC chloride channel signature 73 81 IPR002251 GO:0005247|GO:0006821|GO:0016020
Vimu6g03567 798 Gene3D - 593 784 IPR046342 -
Vimu6g03567 798 SMART cbs_1 728 781 IPR000644 -
Vimu6g03567 798 SMART cbs_1 612 673 IPR000644 -
Vimu6g03567 798 SUPERFAMILY Clc chloride channel 77 592 IPR014743 -
Vimu6g03567 798 MobiDBLite consensus disorder prediction 16 41 - -
Vimu6g03567 798 ProSiteProfiles CBS domain profile. 725 791 IPR000644 -
Vimu6g03567 798 Pfam CBS domain 727 777 IPR000644 -
Vimu6g03567 798 Pfam Voltage gated chloride channel 156 570 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Vimu6g03567 798 FunFam Chloride channel ClC3 91 412 - -
Vimu6g03567 798 CDD ClC_6_like 68 590 - -
Vimu6g03567 798 PRINTS Chloride channel signature 521 537 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Vimu6g03567 798 PRINTS Chloride channel signature 577 591 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Vimu6g03567 798 PRINTS Chloride channel signature 263 282 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Vimu6g03567 798 PRINTS Chloride channel signature 539 558 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Vimu6g03567 798 PRINTS Chloride channel signature 168 185 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Vimu6g03567 798 PRINTS Chloride channel signature 489 509 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Vimu6g03567 798 PRINTS Chloride channel signature 199 218 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Vimu6g03567 798 CDD CBS_pair_voltage-gated_CLC_euk_bac 610 779 - -
Vimu6g03567 798 Gene3D Clc chloride channel 90 592 - -
Vimu6g03567 798 PANTHER CHLORIDE CHANNEL PROTEIN CLC FAMILY MEMBER 24 783 - -
Vimu6g03567 798 SUPERFAMILY CBS-domain pair 594 778 IPR046342 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu6g03567 Vimu-Chr6 32927012 32931565 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu6g03567 35 792 Ion Channels AT3G27170 80.211 0.0 1240
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu6g03567 K05016 - gmx:100788620 1448.72
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu6g03567 6 32927012 32931565 Vimu6g03567 6 32927012 32931565 ECH
Vimu6g03567 6 32927012 32931565 Vimu8g00572 8 12137507 12142238 PCT