Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu6g03559 ATGAAGGTTTTGGTCTTTTTCCTTTGCCTCTTTCTCCCTTCATTTCCCAAACACTTGCTAAGCTGTGAGACACCTTCACCTAATCTCTCTGCCTACCATTGCATCCAAAATGTCTCACACAACCAATGTGCAACATTTGCACTCTTTCTCACAAACTCCTATTACTCCTCTCTCTCCAACCTCACCACTTACTTGGGACTCAATAAGTTTCTGCTAGCACAAGCAAATGGATTCTCTCCACACACTGACTTCCTCTCCCTTCATCAACCCCTTCTCATTCCAATTCATTGCAAATGCAAAGATGGCTTCTCTCATGCTCACCTAACTAAAATTTCTATCAAAGGAGACAACTTCTATGACATTGCTGCATCACTTGAGGGCTTGACAACCTGCAAGGCTATTACTGACAACAACCCTGGTGTATCACCTTGGAATCTTGATGACAATGTCAGATTGACTATCCCATTGAGCTGTTCTTGCCCCTTTTCATCACAAGTTATACCTCAACCAAAGCTTCTGCTTTCTTATCCTGTAAGTCAAGGTGATACACTTTCCAGTTTGGCCTCCAAGTTTAATATTACTCAACAAGCTATTGTCTCTGCCAATAACATATCATCATCATCACAAAGTGCTCTTGCACCCTTTACCTCTATTCTCATTCCTCTCAATGCTAAGCCTGTCATTGGTCCTTTGGTTAAACCCAAGGAACCCAATTCTGGCTTTCAAGCAACCACCATCCCTGTAACCAGTCCACACAAGAAGTCACCAATGTGGAAGACTGAATTGTTCATTGGCCTAGCTGGGGTTGCTCTTGGAGTCTGCATTGCTCTTGCTGCAGCCTTTTTCTTCATCAGATTGAAGCACAAGAAGGGGGAAGAGAGTTCATGCAAAAAAGGAGATGTGGAGCTTCAACATCTCAATCAAAGTGTGAGAACCAACTCCACCGGTGACAAGAAAGTTTCATTTGAAGGGTCTCAGGATACCCTTGATGAGAAAATTGTTGATGTCACATCGCGCAAGATGTTGCTGGAGACATACACCATCGAGAACATCAGAAAAGCAACTGAAGATTTCAGCTCAAGCAATCACATTGAAGGATCAGTATATCACGGTCGTCTGAATGGGAAGAACATGGCAATCAGGAGAACAAAGGCAGAAACAGTGTCAAAGATAGATCTTGGCCTTTTCCATGATGCACTTCACCACCACCCCAACATACTCAGGCTTCTTGGAACAAGCATGTCAGAGGGGAAGGAGCAAGAAGAGTCATTTTTAGTTTTTGAATATGCCAAAAATGGTTCATTGAAAGATTGGCTCCATGGTGGATTAGCCATCAAGAACCAATTCATTGCTTCCTGCTACTGTTTCCTGACATGGAGGCAAAGGCTGAGAATCTGCCTTGATGTGGCCAGTGCCTTGCAGTATATGCACCATGTTATGAATCCCTGCTATGTGCATAGAAATGTAAAGAGCAGGAACATCTTTCTGGACGAAGAATTTGGTGCCAAGTTAGGGAATTTTGGTATGGCAGGTTGTGTTGAGAATGACACTGAGGATCCACACTTCTATTCTACCAACCCCGCCTCCTGGAGCCTTGGTTATTTGGCACCTGAATACGTTCACCAAGGTATAATTGCCCCAAGCATTGATATCTTTGCCTATGGGGTGGTTTTGTTAGAGGTTATATCTGGTCAAACTCCTATAAGCAGGCCAAATGAGAAGGGAGAAGGAAGCATTTGGCTCACAGATAAAATCAAGTCCATCTTGGTGTCTGAAAATGTGAATGAACTAAGGGGCTGGATAGACAGTGCATTAGGGGAGAACTATTCATTCGATGCAGCTGTGACCATTGTCAACATTGCAAGAGCTTGTGTGGAGGAAGATTCTTCATTGAGACCAAGTGCAAGGGAAATTGTTGAGAAGCTATCAAGGTTGGTGGAGGAATTACCAGAAGGAGAACAACACATGTTAATGAGTGAAAGCTCTAGCAAACCTCTGGTGAAGGCAGTGGAAAACAGTCTTGAGTAA 2028 0.4339 MKVLVFFLCLFLPSFPKHLLSCETPSPNLSAYHCIQNVSHNQCATFALFLTNSYYSSLSNLTTYLGLNKFLLAQANGFSPHTDFLSLHQPLLIPIHCKCKDGFSHAHLTKISIKGDNFYDIAASLEGLTTCKAITDNNPGVSPWNLDDNVRLTIPLSCSCPFSSQVIPQPKLLLSYPVSQGDTLSSLASKFNITQQAIVSANNISSSSQSALAPFTSILIPLNAKPVIGPLVKPKEPNSGFQATTIPVTSPHKKSPMWKTELFIGLAGVALGVCIALAAAFFFIRLKHKKGEESSCKKGDVELQHLNQSVRTNSTGDKKVSFEGSQDTLDEKIVDVTSRKMLLETYTIENIRKATEDFSSSNHIEGSVYHGRLNGKNMAIRRTKAETVSKIDLGLFHDALHHHPNILRLLGTSMSEGKEQEESFLVFEYAKNGSLKDWLHGGLAIKNQFIASCYCFLTWRQRLRICLDVASALQYMHHVMNPCYVHRNVKSRNIFLDEEFGAKLGNFGMAGCVENDTEDPHFYSTNPASWSLGYLAPEYVHQGIIAPSIDIFAYGVVLLEVISGQTPISRPNEKGEGSIWLTDKIKSILVSENVNELRGWIDSALGENYSFDAAVTIVNIARACVEEDSSLRPSAREIVEKLSRLVEELPEGEQHMLMSESSSKPLVKAVENSLE 675
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu6g03559 675 FunFam PTI1-like tyrosine-protein kinase 3 430 656 - -
Vimu6g03559 675 SMART LysM_2 175 221 IPR018392 -
Vimu6g03559 675 SUPERFAMILY Protein kinase-like (PK-like) 340 642 IPR011009 -
Vimu6g03559 675 MobiDBLite consensus disorder prediction 653 675 - -
Vimu6g03559 675 CDD LysM 175 208 IPR018392 -
Vimu6g03559 675 Pfam Protein kinase domain 366 640 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu6g03559 675 Gene3D Phosphorylase Kinase; domain 1 330 429 - -
Vimu6g03559 675 Pfam LysM domain 176 221 IPR018392 -
Vimu6g03559 675 SUPERFAMILY LysM domain 175 221 IPR036779 -
Vimu6g03559 675 PANTHER LYSM-DOMAIN RECEPTOR-LIKE KINASE-RELATED 15 649 - -
Vimu6g03559 675 ProSiteProfiles Protein kinase domain profile. 307 658 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu6g03559 675 Gene3D LysM domain 174 221 IPR036779 -
Vimu6g03559 675 ProSiteProfiles LysM domain profile. 174 220 IPR018392 -
Vimu6g03559 675 Gene3D Transferase(Phosphotransferase) domain 1 430 664 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu6g03559 Vimu-Chr6 32825881 32827908 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu6g03559 31 668 LysM Receptor-like Kinase (LYKs) Gene Family AT3G01840 39.790 5.29e-144 432
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LysM Vimu6g03559 Pkinase 4.8e-29 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu6g03559 - - gmx:100816082 1134.01