Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu6g03546 ATGAAGCTCAAACCTTCATTGATGCTTCTTGTAATGTTGTTTTCTGCATTTCCACATTACGATGCTGCCAGTTCTTCTGATTCAGAAGCAAATGCTTTGTTGAAATGGAAAGGCAGCCTTGACAGCCACAGTCAAGCTTCTCTCTCTTCATGGAATGGCAGTAATCCTTGCAACTGGCTGGGAATAGAATGTGATCATTCCCATTCTGTTTCTCACATAAATCTTACACATGTTGGATTAAAAGGTACACTTCAAACTTTCAACTTCTCATTACTTCCAAACATTCTCATTCTCAATATCAGTTTCAACTCCTTGTCTGGAAGTATTCCTCCACAGATTGAACACTTGTCTAATCTCACCACGCTTGATTTCTCTACCAATAAACTCTCCGGTAGCATTCCCAAAACCATCTGTAATCTTTCTAAACTAAAGTATCTGAATCTTAGTGTCAATGGTCTCTCTGGTTCTATTCCTAATGAAGTGGGCCATCTCCAGTCTCTTCTCACATTCGATATATTTACCAACAATCTCTCTGGGCCAATCCCTCCTACCTTAGGAACTCTGCCCCTTTTAGAATCTATTCACCTTTTTGAAAATAAACTCTCTGGACCCATTCCTGCCAGTATTGGGAATTTGTCCAGGCTCACCATGTTATCTTTATCTTCAAATCAGCTCACCGGATCCATCCCTCCCCATATCGGAAATTTATCAAACGCCAAGGTCATATGTTTTATTGGGAACGAACTTAGTGGCGAGATTCCAATAGAAATTGAGAAGCTTACTGGTCTCGAATGTTTGCAACTTGCTGATAATAATTTTATTGGCCAAATACCTCAGAACATTTGCCTCGGCGGAAACATGAAATACTTCACAGCTGGTAATAACAATTTCACTGGCCCGATTCCAGAGACTTTGAAGAAATGCTACAGCCTTAAAAGACTCAGGCTTCAGCAAAACCATCTAACTGGGGATATAACTAACTTTTTTGATGTTCTTCCAAACTTGAACTACATCGATCTCAGTGAAAATAATTTTCACGGTAATCTTTCTCCCACTTGGGGAAAGTTTCGCAGCCTCACAAGCTTCATGATTTCCAAAAACAATTTGTCAGGTGTTATTCCACCTGAACTAGGTGGCGCAACCAAATTACAGGTGCTTGATCTATCCTCAAACCATCTTACAGGAAACATTCCAGAAGATTTATGCAACTTGACCCTCTTGTTTGATCTTTCAATCAACAACAATAATCTTTCTGGAAATGTTCCCTCGAGAATAGAATCGCTGCAGGAACTTAAAATTTTGGAGCTCGGGTCAAATGATTTCACAGGCTTAATCCAGAAAAATCTTGGAAATTTGCGCAATTTATTGTCCTTGAATCTGAGCCAGAATAAATTTGAGGGAAATATTCCTTCAGAGCTTGGCAATTTGAAGGATCTCTCAAGGCTTGATCTCAGTGGAAATTTGTTGAGTGAAAGATTACCACCAACGCTTGGTGGAATAAACAGATTAGAAACATTGAATCTATCCCACAATAGTCTTTCAGGGGGTCTCTCTAGCTTACAGGATATGATAAGTTTGACATCTGTTGACATATCATACAACCAGTTTGAGGGTCCAGTTCCTGACAATGCAGTCTTCCAGAATGTCACCATTGAAGCTCTGAGAAATAACAAAGGCCTGTGTGGCAATGTCGCAGGCTTGGAGCCTTGCCTGAAAGTAAGTGGGAAATCTCATAATAATACTACAAGGAAAGTGCTGATAGCAGTTTTACCCATTACTGTGGCCATTCTAATGCTTGCACTATTTCTTTTTGGTGTTTCCTATAATTTATGCCGAACTTCAAACAAAGAACAAGAGCAGGCTCTAAGTTCACGATCTCCCAGCATGTTTCCAGTATGGAGTTTCGGAGGCAAGATTATGTTTGAGAACATTATTGAAGCCACCGAATATTTTGATGAGAAATATCTCATTGGAGTTGGAGGTCAAGGTTGTGTTTACAGAGCAATATTACCTACAGGTGAAGTTGTTGCTGTGAAGAAACTCCATTCAGTTTCAAATGGAGAAATCCTCAATCAGAAAGCTTTCACAAGAGAGATCCAGGCTTTGACAGAAATCCGACATCGTAACATCGTAAAGTTTCATGGGTTTTGTTCGCATTCACAATACTCATTTTTGGTGTGCGAATTCCTAGAGAGGGGCGATTTGAAGAAGATTTTGAAAGATGATGAACAAGCAACTGCATTTGATTGGAATAAAAGGGTGGATGCTGTTAAAGACGTGGCAAATGCTTTATGCTATATGCACCATGATTGCTTACCTCCAATTGTCCATCGTGATATATCAAGCAAAAACGTTCTTTTGGATTCAGAATATGTAGCTCATGTCTCAGACTTCGGAACAGCTAAGCTTCTTGATCATAAACTTGCATACACAATGGAAGTAAACGAGAAATGTGACGTGTATAGTTTTGGGGTCTTGGCATTGGAAATATTATTTGGAAGGCACCCTGGTGATGTTACATCTTTAATGCAATCTTCTTTATCAACTGGTATGATCTCAACGCTTGATCATATGGCATTGATGGATAACTTGGATGAACGTCTACCTGATCCAACAAGTTCTACTTTGAAAGAGGTGGTATCAATTCTCAAGACAGCAATTTCTTGCCTGACTGAAAGTCCACGATCTCGCCCTACCATGAAGCTTGTAACCAACGAGCTTGCAATGTCGAGGTCATCTTCAATGTCACACTCAGAGCTGAAAGACTGA 2769 0.3983 MKLKPSLMLLVMLFSAFPHYDAASSSDSEANALLKWKGSLDSHSQASLSSWNGSNPCNWLGIECDHSHSVSHINLTHVGLKGTLQTFNFSLLPNILILNISFNSLSGSIPPQIEHLSNLTTLDFSTNKLSGSIPKTICNLSKLKYLNLSVNGLSGSIPNEVGHLQSLLTFDIFTNNLSGPIPPTLGTLPLLESIHLFENKLSGPIPASIGNLSRLTMLSLSSNQLTGSIPPHIGNLSNAKVICFIGNELSGEIPIEIEKLTGLECLQLADNNFIGQIPQNICLGGNMKYFTAGNNNFTGPIPETLKKCYSLKRLRLQQNHLTGDITNFFDVLPNLNYIDLSENNFHGNLSPTWGKFRSLTSFMISKNNLSGVIPPELGGATKLQVLDLSSNHLTGNIPEDLCNLTLLFDLSINNNNLSGNVPSRIESLQELKILELGSNDFTGLIQKNLGNLRNLLSLNLSQNKFEGNIPSELGNLKDLSRLDLSGNLLSERLPPTLGGINRLETLNLSHNSLSGGLSSLQDMISLTSVDISYNQFEGPVPDNAVFQNVTIEALRNNKGLCGNVAGLEPCLKVSGKSHNNTTRKVLIAVLPITVAILMLALFLFGVSYNLCRTSNKEQEQALSSRSPSMFPVWSFGGKIMFENIIEATEYFDEKYLIGVGGQGCVYRAILPTGEVVAVKKLHSVSNGEILNQKAFTREIQALTEIRHRNIVKFHGFCSHSQYSFLVCEFLERGDLKKILKDDEQATAFDWNKRVDAVKDVANALCYMHHDCLPPIVHRDISSKNVLLDSEYVAHVSDFGTAKLLDHKLAYTMEVNEKCDVYSFGVLALEILFGRHPGDVTSLMQSSLSTGMISTLDHMALMDNLDERLPDPTSSTLKEVVSILKTAISCLTESPRSRPTMKLVTNELAMSRSSSMSHSELKD 922
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu6g03546 922 Gene3D Ribonuclease Inhibitor 25 176 IPR032675 -
Vimu6g03546 922 ProSiteProfiles Protein kinase domain profile. 651 920 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu6g03546 922 SMART LRR_typ_2 140 164 IPR003591 -
Vimu6g03546 922 SMART LRR_typ_2 476 500 IPR003591 -
Vimu6g03546 922 SMART LRR_typ_2 260 284 IPR003591 -
Vimu6g03546 922 SMART LRR_typ_2 212 236 IPR003591 -
Vimu6g03546 922 SMART LRR_typ_2 116 139 IPR003591 -
Vimu6g03546 922 SMART LRR_typ_2 381 404 IPR003591 -
Vimu6g03546 922 SMART LRR_typ_2 452 475 IPR003591 -
Vimu6g03546 922 SMART LRR_typ_2 92 115 IPR003591 -
Vimu6g03546 922 SUPERFAMILY L domain-like 27 325 - -
Vimu6g03546 922 Pfam Leucine Rich Repeat 502 518 IPR001611 GO:0005515
Vimu6g03546 922 FunFam Nuclear pore complex protein NUP107 26 181 - -
Vimu6g03546 922 Gene3D Transferase(Phosphotransferase) domain 1 730 921 - -
Vimu6g03546 922 SMART LRR_sd22_2 476 502 - -
Vimu6g03546 922 SMART LRR_sd22_2 116 142 - -
Vimu6g03546 922 SMART LRR_sd22_2 212 238 - -
Vimu6g03546 922 SMART LRR_sd22_2 380 406 - -
Vimu6g03546 922 ProSitePatterns Tyrosine protein kinases specific active-site signature. 775 787 IPR008266 GO:0004672|GO:0006468
Vimu6g03546 922 ProSiteProfiles Leucine-rich repeat profile. 382 405 IPR001611 GO:0005515
Vimu6g03546 922 FunFam Leucine-rich repeat receptor protein kinase MSP1 613 729 - -
Vimu6g03546 922 FunFam MDIS1-interacting receptor like kinase 2 isoform A 182 281 - -
Vimu6g03546 922 SUPERFAMILY Protein kinase-like (PK-like) 628 907 IPR011009 -
Vimu6g03546 922 PRINTS Leucine-rich repeat signature 383 396 - -
Vimu6g03546 922 PRINTS Leucine-rich repeat signature 500 513 - -
Vimu6g03546 922 Gene3D Phosphorylase Kinase; domain 1 611 729 - -
Vimu6g03546 922 Pfam Leucine rich repeat 430 489 IPR001611 GO:0005515
Vimu6g03546 922 Pfam Leucine rich repeat 97 153 IPR001611 GO:0005515
Vimu6g03546 922 Pfam Leucine rich repeat 357 417 IPR001611 GO:0005515
Vimu6g03546 922 Gene3D Ribonuclease Inhibitor 283 578 IPR032675 -
Vimu6g03546 922 Pfam Leucine rich repeat N-terminal domain 27 65 IPR013210 -
Vimu6g03546 922 Pfam Protein kinase domain 653 903 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu6g03546 922 PANTHER LEUCINE RICH REPEAT KINASE 2 24 189 - -
Vimu6g03546 922 Gene3D Ribonuclease Inhibitor 177 282 IPR032675 -
Vimu6g03546 922 SUPERFAMILY L domain-like 288 562 - -
Vimu6g03546 922 FunFam Uncharacterized protein 282 579 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu6g03546 Vimu-Chr6 32692002 32695254 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu6g03546 7 804 Receptor kinase-like Gene Family AT4G08850 41.189 0.0 625
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Vimu6g03546 Pkinase 2.2e-33 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu6g03546 - - gmx:100809509 1334.32