Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu6g03533 ATGGTTTTCACCAGAGCCGAGCAGAGTGCAACATCGAATTCCCCTGTCACGAATGGCGTTAAAGAAGATAAGGATTTAAAGAAGTTGAAACAATCGAAGGCTTCTCCAACTGCGCCGCGTAGATCGAGCGCTCGAATTCAAGCTCTGCAGAAAGCAGAGAAGACAGTAGCCGGACCAAATGCAGTGGTAGTTAAAGGGGAGGACAAATGTGAAGACAATGTTAAGGAAGGGAAGGGTAAGAAGCGCAGTAGAAAGAGTGGCCCTGTGGATAGTTTGGTGGTGGAAGAACAGTCTGTTTTACTGTTGAAGAAAAAGCCATTGGCGTGTGGCAAGGATGAGATGAAAGTAGAGAATGCTGTTGGACAGTTTGAAGATAAGAGTGATACAGTTAAAGTTAAAGATACCATACGATTATTCAATAAATATTATCTGCAATTAGTTCAGGAAGAAGAAAAAAGGTGTGTACGGGTTGAGACTCAGCCTAAGGATGCTAACTCTCCTAAGAAGTCTTCTCAGAAGGCTTCAAAATCAAAGAAAGGTGCTCCACATGTAGATTCAAAGAAACCTGCTAAACGACCAGATCTGAAGGCCATATCCAAGGCAAGTGAAAATTCATCGGCTTTCTTTTATTTGATGATGGAAAATAATGAAATACTGTACTCTGAGAAAAGAATTGGCAGCATTCCAGGTATTGAAGTTGGGTATCAGTTCTATTCTCGTGCTGAAATGGTTGCAGTTGGTTTTCATAGTCACTGGTTAAATGGCATTGATTATATGGGCCAGTCTTATGCCAAAGCGTATAGCTTTGAATTTCCAATTGCTATTGCAATTGTTTTGTCGGGCATGTATGAGGATGACCAGGACAATGCTGAAGATGTTGTGTACACTGGTCAAGGTGGTCATAATCTTACTGGTGATAAGCGTCAAATTCAGGATCAAAAGTTGGAGCGTGGGAACCTAGCTCTCAAGAATTGTGTGGAGCAATGTGTGCCTGTAAGAGTGATTCGAGGTCATGATTCTTCAAGTAGTTACTCTGGGAAAGTATACACTTATGATGGCTTGTACAAGCCAATCCAGGGAGGCAAATCCTCCCTAGCAAAACGAAGAAGAGATTTTCCGCATAGGGTTTATTTTACTTATGGACGTGTTCCTCAATCTATAGCAGAAATACGAGGATTGGTTTGTGAGGATATCACCGGAGGTTTCACATATTGTAAGTCTCTTAAGGTAGCAAAAAATGTGAAGCTTCCCTCTAATGCCGCTGGATGCAAATGCAAAGGCTTGTGTAATGACCCAACAACATGTGCATGTGCTTTGCGTAATGGCTCTGATTTTCCCTATGTATCTCGGAATGGTGGCAGGTTAGTAGAAGCTAAAGATGTAGTATTTGAATGTGGCCCCAAATGTGGTTGTGGTCCTGGTTGTGTCAACCGAACTTCTCAGAAAGGACTTAGATATCGTCTGGAGGTTTTCCGGACTGCCAAAAAAGGATGGGCTGTCAGATCCTGGGATTTTATACCTTCTGGAGCACCAGTTTGTGAGTACACAGGAATACTTGCTAGAACGGAAGACATGGATAGCATGTTGGAAAACAATTATATTTTTGAGATAGATGGCTTGCAAACGATCAAGGGCCTTGGTGGTAGAGAGAGGCGGTCACAAGATGGAGAAATTCCTGAAGATATATTGAACAAATATGAAGATCCAAGTTCCGAAAGTGTGCCAGAGTTTTGCATTGATGCAGGATCTACTGGAAATATTGCTAGATTTATAAACCATTGTTGTGAGCCTAATCTGTTCGTGCAGTGTGTTTTGAGCACACACGATGATTTGAGGTTGGCTCGTGTAATGCTTTTTGCTGCGGACAACATACCCCCTTTGCAGGAATTAACGTATGACTATGGTTACGCCCTAGATAGCGTGTTGGGCTCGGATGGGAAGATCAAGCAAATGCCATGCTATTGTGGGGCCGCAGACTGCAGGAAGCGATTATTCTAA 1998 0.4259 MVFTRAEQSATSNSPVTNGVKEDKDLKKLKQSKASPTAPRRSSARIQALQKAEKTVAGPNAVVVKGEDKCEDNVKEGKGKKRSRKSGPVDSLVVEEQSVLLLKKKPLACGKDEMKVENAVGQFEDKSDTVKVKDTIRLFNKYYLQLVQEEEKRCVRVETQPKDANSPKKSSQKASKSKKGAPHVDSKKPAKRPDLKAISKASENSSAFFYLMMENNEILYSEKRIGSIPGIEVGYQFYSRAEMVAVGFHSHWLNGIDYMGQSYAKAYSFEFPIAIAIVLSGMYEDDQDNAEDVVYTGQGGHNLTGDKRQIQDQKLERGNLALKNCVEQCVPVRVIRGHDSSSSYSGKVYTYDGLYKPIQGGKSSLAKRRRDFPHRVYFTYGRVPQSIAEIRGLVCEDITGGFTYCKSLKVAKNVKLPSNAAGCKCKGLCNDPTTCACALRNGSDFPYVSRNGGRLVEAKDVVFECGPKCGCGPGCVNRTSQKGLRYRLEVFRTAKKGWAVRSWDFIPSGAPVCEYTGILARTEDMDSMLENNYIFEIDGLQTIKGLGGRERRSQDGEIPEDILNKYEDPSSESVPEFCIDAGSTGNIARFINHCCEPNLFVQCVLSTHDDLRLARVMLFAADNIPPLQELTYDYGYALDSVLGSDGKIKQMPCYCGAADCRKRLF 665
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu6g03533 665 SMART preset_2 387 470 IPR007728 GO:0005634|GO:0008270|GO:0034968|GO:0042054
Vimu6g03533 665 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE SETMAR 15 658 - -
Vimu6g03533 665 ProSiteProfiles Pre-SET domain profile. 421 483 IPR007728 GO:0005634|GO:0008270|GO:0034968|GO:0042054
Vimu6g03533 665 MobiDBLite consensus disorder prediction 1 19 - -
Vimu6g03533 665 SMART G9a_1 221 363 IPR003105 -
Vimu6g03533 665 MobiDBLite consensus disorder prediction 1 53 - -
Vimu6g03533 665 SUPERFAMILY PUA domain-like 210 356 IPR015947 -
Vimu6g03533 665 MobiDBLite consensus disorder prediction 157 196 - -
Vimu6g03533 665 Pfam SAD/SRA domain 225 358 IPR003105 -
Vimu6g03533 665 ProSiteProfiles Post-SET domain profile. 649 665 IPR003616 -
Vimu6g03533 665 MobiDBLite consensus disorder prediction 67 90 - -
Vimu6g03533 665 SMART set_7 486 641 IPR001214 GO:0005515
Vimu6g03533 665 Gene3D - 210 364 IPR036987 -
Vimu6g03533 665 Pfam SET domain 497 635 IPR001214 GO:0005515
Vimu6g03533 665 Pfam Pre-SET motif 400 478 IPR007728 GO:0005634|GO:0008270|GO:0034968|GO:0042054
Vimu6g03533 665 ProSiteProfiles SET domain profile. 486 635 IPR001214 GO:0005515
Vimu6g03533 665 SUPERFAMILY SET domain 401 662 IPR046341 -
Vimu6g03533 665 Gene3D SET domain 386 665 IPR046341 -
Vimu6g03533 665 ProSiteProfiles YDG domain profile. 226 378 IPR003105 -
Vimu6g03533 665 MobiDBLite consensus disorder prediction 67 89 - -
Vimu6g03533 665 SMART PostSET_3 649 665 IPR003616 -
Vimu6g03533 665 MobiDBLite consensus disorder prediction 178 196 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu6g03533 Vimu-Chr6 32460992 32474165 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu6g03533 212 665 EF-hand Containing Proteins AT5G13960 60.649 0.0 607
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Vimu6g03533 SET 1.3e-17 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu6g03533 K11420 - gmx:100795584 936.406