Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu6g03531 ATGCAAGTATTTTCTAAAACTTTTTGCAAAGGGTCTCTGACTACAGAAGAACCTTTCATAGAGTTGAACAAGGTGGATCGAAGGCATGGAAAGAGGCCTCTCCCTTCTGATCATGCATCAAGGGAGAATAGGGAAGGTTTCAACTTCCCTAGCCAACAAGGGGAAGAACCTTCTTCATTCCCCTTTCTTCAACAACCTATCAATACTGCTGATGATAGCACCCCTTCTACACCAGTTCCACAATATGCCCAAATAGCCACTTCTACCTTGATTGAGACACAGGACCCATCTCAGCACCCTTTAAATCAAGGTAAAAAATTTGCCAGCACTCCCTTGAATGTTATTATACAAGGTTGGTGTCTATATTGTTACGATGATGTTGATTGTGGGGACAAGAAGTTAGGGAGAAAAAGACACTATCGTGGAGTTCGACAGAGACCATGGGGGAAATGGGCTGCCGAAATCCGTGACCCTAAAAAGGCTGCTAGAGTATGGCTTGGCACTTTTGACACGGCAGAGGCTGCAGCTGCTGCTTATGATGCTGCTGCTTTGAAGTTTAAAGGATCCAAAGCAAAGCTCAATTTCCCAGAACACGTTCTTCTTGCTTCAATACCACCTTCACCTTCTGCTCAAAACATAAACATTAACAGTAATAACAGTTATGCTTCTTTTTCTTCACCACCAGTTTATCAGCCACAACCCTTGTTATCACCATCACAGGAAGAAGCGTTTCCAAATCTAATGCAGTACGCACAGCTTCTTTGGAGTAGGGATGATGATGATCTACAACGTGTTGCTTCAGGCCTTCACCATAATCATAATCATAATCATAATCCCACTGAGTCTTTCTATGGTTCCAGTTCTTCAACTATGTTCTCTTTCTCGTCCACTTCAGTTGTGACCGAGTCTGATAAACAGATTGGAGGTGACGCCGGTGACTCCAAGGAGGGAGAGTATTATGGTTCTTGCTTTTCTAGAGGGAGTGATTTTCACGGCAAGAATTGA 1005 0.4328 MQVFSKTFCKGSLTTEEPFIELNKVDRRHGKRPLPSDHASRENREGFNFPSQQGEEPSSFPFLQQPINTADDSTPSTPVPQYAQIATSTLIETQDPSQHPLNQGKKFASTPLNVIIQGWCLYCYDDVDCGDKKLGRKRHYRGVRQRPWGKWAAEIRDPKKAARVWLGTFDTAEAAAAAYDAAALKFKGSKAKLNFPEHVLLASIPPSPSAQNININSNNSYASFSSPPVYQPQPLLSPSQEEAFPNLMQYAQLLWSRDDDDLQRVASGLHHNHNHNHNPTESFYGSSSSTMFSFSSTSVVTESDKQIGGDAGDSKEGEYYGSCFSRGSDFHGKN 334
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu6g03531 334 SMART rav1_2 139 202 IPR001471 GO:0003700|GO:0006355
Vimu6g03531 334 SUPERFAMILY DNA-binding domain 139 197 IPR016177 GO:0003677
Vimu6g03531 334 FunFam Ethylene-responsive transcription factor 2 138 197 - -
Vimu6g03531 334 CDD AP2 139 198 IPR001471 GO:0003700|GO:0006355
Vimu6g03531 334 PANTHER DNA-BINDING DOMAIN 89 266 IPR044808 GO:0003700|GO:0009873
Vimu6g03531 334 MobiDBLite consensus disorder prediction 24 44 - -
Vimu6g03531 334 MobiDBLite consensus disorder prediction 302 334 - -
Vimu6g03531 334 MobiDBLite consensus disorder prediction 24 80 - -
Vimu6g03531 334 ProSiteProfiles AP2/ERF domain profile. 139 196 IPR001471 GO:0003700|GO:0006355
Vimu6g03531 334 MobiDBLite consensus disorder prediction 45 80 - -
Vimu6g03531 334 Pfam AP2 domain 139 188 IPR001471 GO:0003700|GO:0006355
Vimu6g03531 334 Gene3D AP2/ERF domain 138 198 IPR036955 GO:0003700|GO:0006355
Vimu6g03531 334 PRINTS Ethylene responsive element binding protein signature 162 178 IPR001471 GO:0003700|GO:0006355
Vimu6g03531 334 PRINTS Ethylene responsive element binding protein signature 140 151 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu6g03531 Vimu-Chr6 32411376 32413993 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu6g03531 128 250 AP2-EREBP Transcription Factor Family AT5G61890 59.350 3.03e-37 132
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Vimu6g03531 AP2 2.1e-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu6g03531 - - var:108318772 471.085