Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu6g03524 ATGGATCTTCTCTTTCTTCTTCAGTGCCTTCTCTTCTTCACTTCGCATCACGCAAATGCCCTCAATGTTTCAATTTCTCGCGACGCATTGTCACTTCTCTCTTTTAAAAGCTTCGTCTCTTCCGACCCTTCCAACATCCTCGCCGGTTGGACCAACCGCTCCTCCTCCAATCTCTGCCGATGGCACTCCGTTGCGTGTGGCGGCGCAGGGAGCCTCTCTGACCGAGTCACTTCCCTCAATGTCACCGGTCTCGGCGGCGGCCTGTTGTCGCCCTCCGTCGGCGACTTGTCTGAGCTCCGCGTGCTGTCCCTCGTCGGGAACATGTTCTCCGGCGAGATTCCTGCTACCGTTGGGAACCTTCGGTTTCTCGAGGTCCTCGAACTGCAAGGGAACAACTTTTCAGGGAGAGTCCCGACCCAGATGAGTTTTGCTTTTCTTCAGTCTCTTAAACTTGTTAATCTCTCTGGTAATGCCTTCTCTGGTTCGATTCCGAGTGAGATTATTGGCTATGGGAGTGTGACAGTCGTTGATTTGTCGAATAATCAGTTTTCTGGTGTGATTCCTCTGAATGGTACTTGTGATTCGTTGAAGCATTTGAAGTTGTCTCGTAACTTTTTGACTGGGGAGATTCCATCCCAAATTGGCAAATGTAGAAACTTGAGGACCCTTTTGGTTGATGGGAACATCTTGGAAGGTAAAATCCCTTCTGAGATTGGCCAAATTGTTGAACTTAGAGTTCTGGATGTTTCTAGAAACTCACTGACTGGAAGGGTCCCTAAGGAGTTGGCTAATTGTGTGAAACTGTCTGTGCTTGTGCTTACTGATTTGTTTGAGGATCGTGATGATGGAGGATTGGATGATGGCTTCAGAGGAGAGTTTAATGCCTTTGTTGGGAACATACCTCATCAGGTGTTGCTGCTTCCAAGTCTGAGGGTGTTGTGGGCACCAAGGGCAAATCTTGGTGGACGGTTGCCTAGTGGCTGGTCGGAGTTGTGCTCTCTGAGGGTGCTCAATTTGGTGCAGAATTATGTTACCGGTGTCTTGCCCGAGAGTTTGGGGATGTGTAGGAATTTGAGTTTCCTGGACTTGAGTTCTAATAATTTGGGGGGTTATTTGCCTTCATTGCAGCTTCCTGTTCCTTGTATGGTGTACTTTAATGTCAGCAGAAACAATATATCTGGCACTCTTAAAGGATTTAGGAAAGAAAGTTGCGGTGTGAATGCAGTAGACCCCTCATTTCTAGAATTGGATGGTTATAGTGATGATGAATACTTTAATTTACCTGTTTGGAGGTTTCAAAAGAATGCTTTCGTTGGATCTGGTTTTGAGGAGAATAACACTATTGTTGTTAGGCATGATTTCGGTTGGAATAGTTTTGTGGGATCCTTGCCTTCGTTCTCTCTTGGAGATAATCTTTTTAGTGCTAATCGTAAAGTCTCCTATGCGCTGTCTCTCAATAATAATAGATTCAGTGGAACTCTACCGGACCAGTTAGTTTCAAACTGTAACGAGCTCAAGACATTGTCAGTTAACTTGAGTGTGAACCAACTATCGGGTGGGAATTTCCAAACGTCGGTTTTGGAGTGCCTAAAGTTGACAGATTTTGAAGCAGCATACAACCAGATTGATGGGTCAATTGGACCAGCTATAGGTGGCTTGGTGATGCTTCAGCATCTTGATTTAAGTGAGAACAAGCTATCTGGATCACTGCCGAATCAGTTTGGAAACCTTCAAAACATGAAACGGATGCATCTGGGAGGAAACAATCTAACAGGGGAAATTCCTACCCGACTTGGCCAATTGACTTCCCTTGCTGTTTTGAATTTGTCTCACAATGCTCTAGTTGGAACAATACCTGCGAGTTTGTCAAATGCCAAAAGTTTTGAAATTCTGTTGGTGGACCACAACAAACTTTCTGGGGAAATACCTTTAACTTTTTCTACTCTTTCCAATCTTGTGCAGCTAGATGTTTCTTTTAACAATCTTTCTGGTCATATTCCTCGTCTTCAACACCCAAGTGACTGTGATTCCTACAAAGGAAATGCGCACTTGCATCCTTGCCCTGATCCATATTCTGACTCACCTGCTTCTCTACCCGTCCCCCTTGAAATCCAGCATCATACTCATAGAGGGAGAAAATTAAGGACATTGGTTATTGTTGTGGTAGCTTCTGCTTCTGTGGTGCTGTGCACTCTTCTGGGAATAGTATTGGTAATCTTTTCTGGTAGGAGTAAATTTGGTCGGCTTAGCAGTATAAGAAGGCGACAGGTAGTGACCTTTGAAGATGTTCCAACTGAATTGAACTATGACAGTGTGGCCACAGCTACTGGAAACTTCAGCATCCGGCATCTAATTGGAACAGGCGGCTTTGGGTCAACATACAAGGCAGAACTATCCCCAGGTTTTCTTGTTGCCATAAAGAGGTTGTCCATAGGTAGGTTTCAAGGCATTCAACAGTTTGAAACGGAAATAAGGACACTGGGAAGAATTCGACACAAGAATCTTGTGACTCTTATTGGATATTATGTAGGGAAGGCTGAAATGTTCTTAATTTACAACTACCTTTCCGGAGGGAACCTTGAAGCTTTCATACATGACAGGTCAGGGAAGAATGTTCAGTGGCCAGTTATTTACAAAATAGCAAAAGACATAGCAGAGGCCCTTGCTTTCCTTCACTACTCATGTGTTCCTCGCATTGTTCACCGAGATATCAAACCTAGCAACATTTTACTTGATGAAGATCATAATGCCTACCTGTCAGATTTTGGCTTGGCACGACTGCTTGAGGTAACTGAGACCCATGCCACCACTGATGTTGCAGGCACATTTGGTTACGTTGCACCAGAATATGCCACCACTTGCAGGGTTTCTGACAAAGCCGATGTCTACAGCTTTGGTGTGGTGTTATTAGAATTGATGTCTGGAAGAAAGTCACTTGATCCATCTTTTTCTGAGTATGGAAATGGATTCAACATTGTACCATGGGCAGAGCTACTAATGACCGAAGGCCGTTGTTCTGAGCTATTTTCATCTACTTTATGGGAAGTAGGGCCTAAGGAAAAATTGTTGGGCCTTTTAAAGCTTGCCTTAACATGCACAGAAGAGACTCTTTCTATTCGACCGTCAATGAAACAGGTTCTTGAGAAATTGAAATATTTGAAAAGTTGA 3168 0.4416 MDLLFLLQCLLFFTSHHANALNVSISRDALSLLSFKSFVSSDPSNILAGWTNRSSSNLCRWHSVACGGAGSLSDRVTSLNVTGLGGGLLSPSVGDLSELRVLSLVGNMFSGEIPATVGNLRFLEVLELQGNNFSGRVPTQMSFAFLQSLKLVNLSGNAFSGSIPSEIIGYGSVTVVDLSNNQFSGVIPLNGTCDSLKHLKLSRNFLTGEIPSQIGKCRNLRTLLVDGNILEGKIPSEIGQIVELRVLDVSRNSLTGRVPKELANCVKLSVLVLTDLFEDRDDGGLDDGFRGEFNAFVGNIPHQVLLLPSLRVLWAPRANLGGRLPSGWSELCSLRVLNLVQNYVTGVLPESLGMCRNLSFLDLSSNNLGGYLPSLQLPVPCMVYFNVSRNNISGTLKGFRKESCGVNAVDPSFLELDGYSDDEYFNLPVWRFQKNAFVGSGFEENNTIVVRHDFGWNSFVGSLPSFSLGDNLFSANRKVSYALSLNNNRFSGTLPDQLVSNCNELKTLSVNLSVNQLSGGNFQTSVLECLKLTDFEAAYNQIDGSIGPAIGGLVMLQHLDLSENKLSGSLPNQFGNLQNMKRMHLGGNNLTGEIPTRLGQLTSLAVLNLSHNALVGTIPASLSNAKSFEILLVDHNKLSGEIPLTFSTLSNLVQLDVSFNNLSGHIPRLQHPSDCDSYKGNAHLHPCPDPYSDSPASLPVPLEIQHHTHRGRKLRTLVIVVVASASVVLCTLLGIVLVIFSGRSKFGRLSSIRRRQVVTFEDVPTELNYDSVATATGNFSIRHLIGTGGFGSTYKAELSPGFLVAIKRLSIGRFQGIQQFETEIRTLGRIRHKNLVTLIGYYVGKAEMFLIYNYLSGGNLEAFIHDRSGKNVQWPVIYKIAKDIAEALAFLHYSCVPRIVHRDIKPSNILLDEDHNAYLSDFGLARLLEVTETHATTDVAGTFGYVAPEYATTCRVSDKADVYSFGVVLLELMSGRKSLDPSFSEYGNGFNIVPWAELLMTEGRCSELFSSTLWEVGPKEKLLGLLKLALTCTEETLSIRPSMKQVLEKLKYLKS 1055
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu6g03524 1055 Gene3D Ribonuclease Inhibitor 289 440 IPR032675 -
Vimu6g03524 1055 Gene3D Ribonuclease Inhibitor 86 276 IPR032675 -
Vimu6g03524 1055 FunFam LRR receptor-like serine/threonine-protein kinase GSO1 445 695 - -
Vimu6g03524 1055 Gene3D Ribonuclease Inhibitor 22 85 IPR032675 -
Vimu6g03524 1055 Gene3D Ribonuclease Inhibitor 450 695 IPR032675 -
Vimu6g03524 1055 SUPERFAMILY L domain-like 297 672 - -
Vimu6g03524 1055 FunFam LRR receptor-like serine/threonine-protein kinase RPK2 288 408 - -
Vimu6g03524 1055 Pfam Leucine Rich Repeat 195 217 IPR001611 GO:0005515
Vimu6g03524 1055 SUPERFAMILY RNI-like 82 394 - -
Vimu6g03524 1055 SUPERFAMILY Protein kinase-like (PK-like) 757 1050 IPR011009 -
Vimu6g03524 1055 ProSitePatterns Protein kinases ATP-binding region signature. 785 807 IPR017441 GO:0005524
Vimu6g03524 1055 FunFam LRR receptor-like serine/threonine-protein kinase RPK2 743 854 - -
Vimu6g03524 1055 SMART serkin_6 779 1053 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu6g03524 1055 ProSitePatterns Serine/Threonine protein kinases active-site signature. 899 911 IPR008271 GO:0004672|GO:0006468
Vimu6g03524 1055 SMART LRR_typ_2 146 170 IPR003591 -
Vimu6g03524 1055 SMART LRR_typ_2 96 120 IPR003591 -
Vimu6g03524 1055 SMART LRR_typ_2 241 265 IPR003591 -
Vimu6g03524 1055 SMART LRR_typ_2 601 625 IPR003591 -
Vimu6g03524 1055 SMART LRR_typ_2 331 354 IPR003591 -
Vimu6g03524 1055 SMART LRR_typ_2 649 671 IPR003591 -
Vimu6g03524 1055 SMART LRR_typ_2 553 576 IPR003591 -
Vimu6g03524 1055 Pfam Leucine rich repeat 556 614 IPR001611 GO:0005515
Vimu6g03524 1055 CDD STKc_IRAK 785 1051 - -
Vimu6g03524 1055 FunFam Leucine-rich repeat receptor-like protein kinase 25 187 - -
Vimu6g03524 1055 Pfam Protein kinase domain 781 980 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu6g03524 1055 Gene3D Phosphorylase Kinase; domain 1 742 854 - -
Vimu6g03524 1055 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 214 1051 - -
Vimu6g03524 1055 FunFam Piriformospora indica-insensitive protein 2 188 277 - -
Vimu6g03524 1055 FunFam LRR receptor-like serine/threonine-protein kinase RPK2 855 1055 - -
Vimu6g03524 1055 PRINTS Leucine-rich repeat signature 556 569 - -
Vimu6g03524 1055 PRINTS Leucine-rich repeat signature 601 614 - -
Vimu6g03524 1055 Pfam Leucine rich repeat N-terminal domain 27 66 IPR013210 -
Vimu6g03524 1055 Gene3D Transferase(Phosphotransferase) domain 1 855 1054 - -
Vimu6g03524 1055 ProSiteProfiles Protein kinase domain profile. 779 1053 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu6g03524 Vimu-Chr6 32313194 32318033 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu6g03524 2 1054 Receptor kinase-like Gene Family AT3G02130 43.554 0.0 793
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XV Vimu6g03524 Pkinase 2.2e-42 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu6g03524 - - gmx:100795047 1695.25