Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu6g03520 ATGTCAAGTACTCTTGCAGCAATATTTGGAGGAGCTGCAGGAGCCGTGGCATTGGTAGGGATTGCTATACTTATATGGTTTTGTTTGTCTCGCCAGAGGAATGTTTCTAGAACTTCAGAGACAGGGTCCTCTGATCCTTCACAAGTTGGAAGACATGGTGCAATCGAGTTGCCTATACGAGACACTAGACGTTTTGAGATGGAAGAACTATCTCTGGCAACAAAAAGTTTCAGTGACAAAAATTTGATTGGAGAAGGGAAATTTGGAGAGGTTTACAAGGGTTTACTTCAAGATGGGATGCTTGTAGCCATCAAAAAACGTCGTGGACTCGCCAGTCAAGAATTTGTGGATGAGGTACGTTATCTCTCATCCATTCACCACCGGAATGTCGTCACTCTTTTAGGCTACTGTCAGGAGAACAGTCTTCAGTTTCTTATATATGAATATGTGCCTAATGGAAGCGTCTCCAGTCACTTGTATGGCGGTGGTCAACAATCGCAGCAGAAGCTAGAATTCAAGCTTAGGCTTTCAATAGCTCAAGGTGCAGCTAAAGGTTTGGCTCATCTTCACTCTCTGAGTCCACGTTTGGTGCATAAGAATTTCAAAACTGCTAATGTTCTTGTGGATGAAAACTTCATTGCTAAGGTGGCAGATGCTGGACTCCGCAACTTTCTGGGGAGAGTTGACACTGCAGGCTCCTCTTCTCAAGTGGCAACAGATGAAATATTCCTTGCATCAGAGGTGAGAGAGTTCAGACGATTTTCTGAAAAGAGCGACGTATACAGCTTTGGAGTGTTAAGCAATGAAGGCCGTGGCATGATGTCTTATGATCGGAGATTGGAGAGTAGTTTTACAGCTGAAGGAATGGAAGACTACATCATGCTCATGATCAGATGCTTAGACCCTTCAAGTGAGAGAAGACCTGCCATGAGCTATGTGGAAACGGAACTTGATAGGATCCTAGAGAAGGAAATGAAATTGACAACAATCATGGGAGAAGGAACCCCATATGTGACTCTTGGAAGCACGTTATTCAAATCAACAACATGA 1050 0.4362 MSSTLAAIFGGAAGAVALVGIAILIWFCLSRQRNVSRTSETGSSDPSQVGRHGAIELPIRDTRRFEMEELSLATKSFSDKNLIGEGKFGEVYKGLLQDGMLVAIKKRRGLASQEFVDEVRYLSSIHHRNVVTLLGYCQENSLQFLIYEYVPNGSVSSHLYGGGQQSQQKLEFKLRLSIAQGAAKGLAHLHSLSPRLVHKNFKTANVLVDENFIAKVADAGLRNFLGRVDTAGSSSQVATDEIFLASEVREFRRFSEKSDVYSFGVLSNEGRGMMSYDRRLESSFTAEGMEDYIMLMIRCLDPSSERRPAMSYVETELDRILEKEMKLTTIMGEGTPYVTLGSTLFKSTT 349
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu6g03520 349 Gene3D Transferase(Phosphotransferase) domain 1 150 334 - -
Vimu6g03520 349 FunFam Protein kinase superfamily protein 42 149 - -
Vimu6g03520 349 SUPERFAMILY Protein kinase-like (PK-like) 58 314 IPR011009 -
Vimu6g03520 349 ProSitePatterns Protein kinases ATP-binding region signature. 83 106 IPR017441 GO:0005524
Vimu6g03520 349 Pfam Protein tyrosine and serine/threonine kinase 81 269 IPR001245 GO:0004672|GO:0006468
Vimu6g03520 349 PANTHER PROLINE-RICH RECEPTOR-LIKE PROTEIN KINASE PERK4 13 266 IPR047117 -
Vimu6g03520 349 ProSiteProfiles Protein kinase domain profile. 77 321 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu6g03520 349 Gene3D Phosphorylase Kinase; domain 1 42 149 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu6g03520 Vimu-Chr6 32263137 32266010 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu6g03520 59 323 Receptor kinase-like Gene Family AT1G79620 36.242 2.65e-51 181
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-IXa Vimu6g03520 PK_Tyr_Ser-Thr 5.9e-37 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu6g03520 - - gmx:100820178 593.193