Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu6g03505 ATGAGTTTTCAAGACATCCAAGGTGGACCCCACCCTCAATCTCGCCGGAACCAGTCGCCGGCGCAGGCCGTCGCTGCCGGAATTTTCCAGATCAACACTTCCGTCGCCACTTTTCGGCGACTCGTTGATGCCGTCGGAACCGTTAAAGACACTCCCGAACACCGTCAGAAGCTGCACAATACGAGGCAGAGGATATTGCAACAGGTGAAGGATACTTCTGCTAAGCTCAAATCCTTGAGTGAATCTGATCGTGGTGCTAATTCCAATGCTAGTCAGAAAATTGAAGATGCTAAGCTTGCTAGAGATTTTCAAACGACATTGCAAGAGTTTCAGAAAGTACAACAGCTTGCTTCTGAGCGAGAATCTGCTTACACCCCTGCCTCCGCCTCTTCTACTTTACCAATAAGCTCTGGCTCTGGTGAAGAATCGACTGGAATAGATGTCGAAAGTCAACCTTTTATTAGAGAGCAGAAGAGGCAAGAGATACTTCTATTGGATAATGAAATTTCATTCAACGAGGCCATGATTGATGAAAGAGAACAAGGAATTAGAGAGGTAGAAGAGCAAATTGGACAAGCAAATGAAATATTCAGGGACCTTGCTGTTCTTGTTCATGATCAGGGAGTTGTTATTGATGACATTCAATCAAATATTGATGCTTCTGCTGGTGCAACAACCCAAGCTAGGGTCCAGCTAGCCAAGGCTTCCAAAAGTGTGAAAACCAGAACCTCATGGAGTACAGCAATGCAGTTTGATATATTGACTGCATCTGCAGCTGGAAGTTGGAAGAGGATAGTGAGGCAAAGTGGTTTTATTAAGAAATATTGTCTTGTGTGTAATATTGACTAG 849 0.4441 MSFQDIQGGPHPQSRRNQSPAQAVAAGIFQINTSVATFRRLVDAVGTVKDTPEHRQKLHNTRQRILQQVKDTSAKLKSLSESDRGANSNASQKIEDAKLARDFQTTLQEFQKVQQLASERESAYTPASASSTLPISSGSGEESTGIDVESQPFIREQKRQEILLLDNEISFNEAMIDEREQGIREVEEQIGQANEIFRDLAVLVHDQGVVIDDIQSNIDASAGATTQARVQLAKASKSVKTRTSWSTAMQFDILTASAAGSWKRIVRQSGFIKKYCLVCNID 282
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu6g03505 282 MobiDBLite consensus disorder prediction 119 146 - -
Vimu6g03505 282 Gene3D - 174 237 - -
Vimu6g03505 282 CDD SNARE_Qa 176 234 - -
Vimu6g03505 282 Pfam Syntaxin-like protein 25 124 IPR006011 GO:0016020
Vimu6g03505 282 SUPERFAMILY t-snare proteins 19 228 IPR010989 GO:0016020|GO:0016192
Vimu6g03505 282 MobiDBLite consensus disorder prediction 1 21 - -
Vimu6g03505 282 PANTHER SYNTAXIN 21 243 IPR045242 -
Vimu6g03505 282 MobiDBLite consensus disorder prediction 119 147 - -
Vimu6g03505 282 Gene3D - 10 131 - -
Vimu6g03505 282 SMART tSNARE_6 168 235 IPR000727 -
Vimu6g03505 282 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 173 235 IPR000727 -
Vimu6g03505 282 FunFam Syntaxin-22 like 14 128 - -
Vimu6g03505 282 SMART SynN_4 8 122 IPR006011 GO:0016020
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu6g03505 Vimu-Chr6 31992734 31995086 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu6g03505 1 249 SNARE and Associated Proteins AT5G46860 56.126 4.41e-91 269
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu6g03505 - - gmx:100787141 419.468