Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu6g03489 ATGGAAAAGAGACACAATTATATCAGGAAGACTGCAGAACATGCTACTCAGTTTTTCATCAATCCTGCTACTAGTCAACCCAATGTTTCTGGACTTATACTTGCTGGTTCAGCTGACTTCAAGACAGACCTTAGCCAAGAAAATGGCTTTAACCAAGCTATTGAGTTATCTGCAGAACTGTTATCTAATGTGAAATTCATTCAAGAAAAACGATTGATAGGAAAATACTTTGAAGAAATCAGCCAGGATACTGGGAAATACGTGTTTGGGGTTGATGACACATTGAAGGCTCTGGGGATGGGTGCTGTGGAAATACTCATTGTGTGGGAAAATTTAGATATTAACAGATATGTACTAAAAGATAGTTCTACTGGTGAGATTCTCATAAAGCACTTCAACAAGGAGCAAGAGGCTAATCAGAGCAATTTCAGAGATCCTGTCACCTCTGCAGAGTTAGAAGTTCAGGAGAAGATGCCGTTGCTTGAATGGTTTGCGAATGAGTACAAAAAATTTGGATGCTCACTGGAATTTGTGACCAATAAATCCCAAGAGGGATCACAGTTTTGCAGAGGATTTGGTGGTATTGGTGGTATCCTACGCTACCAGCTTGACATCAGATCGTTTGATGAGTTATCTGATGATGGAGAACTGAGCCAGGATTCTGAATAA 669 0.3991 MEKRHNYIRKTAEHATQFFINPATSQPNVSGLILAGSADFKTDLSQENGFNQAIELSAELLSNVKFIQEKRLIGKYFEEISQDTGKYVFGVDDTLKALGMGAVEILIVWENLDINRYVLKDSSTGEILIKHFNKEQEANQSNFRDPVTSAELEVQEKMPLLEWFANEYKKFGCSLEFVTNKSQEGSQFCRGFGGIGGILRYQLDIRSFDELSDDGELSQDSE 222
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu6g03489 222 PANTHER PEPTIDE CHAIN RELEASE FACTOR SUBUNIT 1 1 47 IPR004403 GO:0003747|GO:0006415
Vimu6g03489 222 Gene3D - 64 222 IPR029064 -
Vimu6g03489 222 SUPERFAMILY Translational machinery components 2 61 - -
Vimu6g03489 222 FunFam Peptide chain release factor subunit 1 64 222 - -
Vimu6g03489 222 Pfam eRF1 domain 3 66 203 IPR005142 -
Vimu6g03489 222 Gene3D eRF1 domain 2 1 48 IPR042226 -
Vimu6g03489 222 Pfam eRF1 domain 2 2 53 IPR005141 -
Vimu6g03489 222 SUPERFAMILY L30e-like 63 205 IPR029064 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu6g03489 Vimu-Chr6 31800933 31801667 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu6g03489 1 222 Eukaryotic Initiation Factors Gene Family AT3G26618 77.869 1.51e-134 383
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu6g03489 K03265 - tcc:18601188 402.519