Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu6g03488 ATGGCTGATGGTCATGAATCAGACAAGAATATTGAGATATGGAAGATCAAGAAATTGATCAAAGCATTAGAATCTGCAAGAGGAAATGGTACAAGCATGATTTCTCTGATTATGCCTCCTCGTGATCAAATTTCTCGTGTCGCTAAGATGTTGGGAGATGAATATGGAACTGCTTCAAATATCAAAAGTAGGGTGAACCGGCAATCAGTGTTGGCTGCCATTACTTCTGCTCAACAGAGGTTGAAACTTTATAATAAGGTTCCTCCCAATGGTTTGGTCCTGTATACTGGCACCATTCTTACAGAAGATGGCAAGGAAAAAAAGGTGACAATTGATTTTGAACCTTTCAAGCCTATAAATGCATCACTTTACCTCTGTGACAACAAGTTTCACACAGAAGCTCTTAATGAACTTTTAGAATCTGATGACAAGTTTGGTTTTATTATTATGGATGGAAATGGAACCCTTTTTGGGACTCTAAGTGGGAATACACGTGAAGTGCTT 504 0.3849 MADGHESDKNIEIWKIKKLIKALESARGNGTSMISLIMPPRDQISRVAKMLGDEYGTASNIKSRVNRQSVLAAITSAQQRLKLYNKVPPNGLVLYTGTILTEDGKEKKVTIDFEPFKPINASLYLCDNKFHTEALNELLESDDKFGFIIMDGNGTLFGTLSGNTREVL 168
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu6g03488 168 Gene3D eRF1 domain 1 2 135 IPR024049 -
Vimu6g03488 168 FunFam Eukaryotic peptide chain release factor subunit 1 2 135 - -
Vimu6g03488 168 SUPERFAMILY N-terminal domain of eukaryotic peptide chain release factor subunit 1, ERF1 6 140 IPR024049 -
Vimu6g03488 168 PANTHER PEPTIDE CHAIN RELEASE FACTOR SUBUNIT 1 5 168 IPR004403 GO:0003747|GO:0006415
Vimu6g03488 168 SMART eRF1_1_2 5 140 IPR005140 -
Vimu6g03488 168 Gene3D eRF1 domain 2 136 168 IPR042226 -
Vimu6g03488 168 Pfam eRF1 domain 1 18 138 IPR005140 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu6g03488 Vimu-Chr6 31799011 31800857 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu6g03488 1 168 Eukaryotic Initiation Factors Gene Family AT5G47880 91.071 2.36e-112 324
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu6g03488 K03265 - mus:103987421 329.331