Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu6g03486 ATGGGAACCTCTTGCCTAAAATCTGCATCAGTTCTTCAAGATCTGAAGGTGACAATCCACAAAACTTCAACCATTTTTGCATCCAAAGAAATGGAGAAGAAGTCCTTCTTCCTATCAAACATAGACAGGGTAGTAAACTTTGATGTGGACACGCTTCACTTCTTCGCAGCAAACAAAGCTTTTTCATTCCAAAAGGTGGCTGAGAAGTTGAAGAAGGCCCTGGAGGATGCTCTTGTGCATTATTCCTTCTTAGCCGGAAGGTTGAGACTGAATCCTGAAACCAAAAGATTAGAGATAGATTGCAACGCAAAAGGTGCTGCGTTTGTGGTGGCTTCAAGTAAGCACAAGTTAAGTGAGATTGGAGACTTGGCTTATCCCAATCCAGCTTATGCACAATTGATTCACAAGAGTGAGGATCTTCCACTCTGCGCTGTGCAGCTGACATCCTTTGACTGTGGTGGCTTCGCAATGGGCTTCACAACCAGCCACGCAGCCTTTGACGGACTTAGCTTCAAAACCTTCTTGGACAACCTTGCGGCACTGGCTGCTAATAAGCCCTTGGCTGTGATACCCTGCCACGACAGGCACCTGCTGGCCGCACGATCACCACCACGTGTAAACTTCCCGAATCCCGAGTTGATCGAACTGGATCAGTCACCAACAACAGGTATTGAGTCCAGCGTCTTTGATGCTTCCAAAGAAGAAGTCGACTTTAGGATTTTGAAACTGAGCTCAAAAGACATCCTGAGCCTCAAGGAGAAAGCAAAGGGAAGCACCAACGCCAGCAACACCGGGTTTAACGTTATCACCGCTCATATATGGCGGTGCAAGGCCTTATCGGCACCGTATGATCCTGCTGGATCCTCGACCGTACTATTCGCCGTGGACATACGTTCAAAACTGAACCCTCCGTTGCCGGAAGGGTTCGCTGGCAACGCCGTGTTAACGGCGTTTGCTTCGGCGAAATACGAAGAGTTGGAGAAGGGTGAGTTTTCAAGGTTGGTGGAAATGGTGAAAGAGGGTGCAGAGAGAATGAGTGATGAGTATGCGAGGTGTGTTATAGACCGCGGAGAGCTGAGTGATGGGTTTCCACGTGGGGATGTTTTGGTGTCTTCGTGGTGGAGATTAGGGTTTGAAAAGGTGGAGTATCCATGGGGGAAGCCAAAGTATTGTTGCCCTCTGGTGCATCATCGGAAGGATATTATTCTCTTGTTTCCTCCCTTTGGCGCAGTTGGTGATGATGGGATCAACATTATAGTGGCTCTTCCTCCCAAGGAAATGGAAAAATTCGAGACCCTCTTTCACATGTTCTTGCCTTCGGTTTGA 1326 0.4804 MGTSCLKSASVLQDLKVTIHKTSTIFASKEMEKKSFFLSNIDRVVNFDVDTLHFFAANKAFSFQKVAEKLKKALEDALVHYSFLAGRLRLNPETKRLEIDCNAKGAAFVVASSKHKLSEIGDLAYPNPAYAQLIHKSEDLPLCAVQLTSFDCGGFAMGFTTSHAAFDGLSFKTFLDNLAALAANKPLAVIPCHDRHLLAARSPPRVNFPNPELIELDQSPTTGIESSVFDASKEEVDFRILKLSSKDILSLKEKAKGSTNASNTGFNVITAHIWRCKALSAPYDPAGSSTVLFAVDIRSKLNPPLPEGFAGNAVLTAFASAKYEELEKGEFSRLVEMVKEGAERMSDEYARCVIDRGELSDGFPRGDVLVSSWWRLGFEKVEYPWGKPKYCCPLVHHRKDIILLFPPFGAVGDDGINIIVALPPKEMEKFETLFHMFLPSV 441
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu6g03486 441 Gene3D - 11 214 IPR023213 -
Vimu6g03486 441 PANTHER TRICHOTHECENE 3-O-ACETYLTRANSFERASE 32 433 - -
Vimu6g03486 441 Gene3D - 221 436 IPR023213 -
Vimu6g03486 441 Pfam Transferase family 15 432 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu6g03486 Vimu-Chr6 31751285 31754555 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu6g03486 15 431 Monolignol Biosynthesis Gene Families AT5G48930 28.604 7.74e-49 171
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu6g03486 K13065 - gmx:100780971 676.011