Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu6g03471 ATGGGAAGCCCTCAATCCAATTTGCCACCTGGTTTTAGGTTCCACCCAACAGATGAAGAACTCATTCTTCACTACCTTAGTAAAAGGGTTGCATCCATACCCTTACCCGTTTCCATCATTGCTGAAGTTGATATCTACAAGTTAGATCCATGGGACTTGCCAGCAAAGGCAACCTTTGGGGAGAAAGAATGGTACTTTTTCAGTCCCAGAGACCGGAAGTACCCAAATGGTGCAAGGCCAAACAGGGCAGCTGCTTCAGGGTATTGGAAGGCCACTGGCACAGATAAGACCATAGTCACATCATTGCAGGGTGGATCAGTCCAAGAGAACATTGGTGTGAAGAAGGCTTTGGTGTTCTACAAAGGAAGACCCCCAAAGGGTGTCAAGACCAATTGGATCATGCATGAATATCGCCTTGTAGACAACAACAAACCCATTAAGCTCAAAGACTCCTCCATGAGATTGGATGATTGGGTGTTGTGTCGGATTTACAAGAAGTCCAAACATGCTTTAACTTCAACAGAGGCAGGAATAGGAGTTGGTGAGGTGGATCAAGCAGAGGAGCAGCAATTCAATGAGACCCTTTTGCCAATCTTAAAATCTCCAATACCTCCTCCTCAGAACTCATTGATGTCTCAAAAATCTGTCTCCTTCTCCAACCTGTTGGATGCCATGGACTACTCTGTACTCAGCAGTTTCTTATCTGAGAACCATTCCAACCCACCTGGGATTGGATCAAGTGCAGGCTTCAATACTGAGAATTTGGAACAGCAATCTTCTCCGATGAACAACCCCAACAATAGCTACACGTTTCAGAAGAACACCCAATTGAACCCTTCACTCTCCAACATGGAAAACATGAGGCCAAAGCGCCAATTTTCAAGCATTGATGAAGAAACTCTGTATCCATCCAAGAAATACCTGACTTCCTCTTGCAACTTTCCTTCCAACATCAACCCCCAATACGAGAATCCACAATGGAACTACCTCGTCAAACAGTCTTTGCTGAATCAGCGGTTACTGCTTGGTCCTCAGCTTCAATTTCAAGGATAA 1053 0.4482 MGSPQSNLPPGFRFHPTDEELILHYLSKRVASIPLPVSIIAEVDIYKLDPWDLPAKATFGEKEWYFFSPRDRKYPNGARPNRAAASGYWKATGTDKTIVTSLQGGSVQENIGVKKALVFYKGRPPKGVKTNWIMHEYRLVDNNKPIKLKDSSMRLDDWVLCRIYKKSKHALTSTEAGIGVGEVDQAEEQQFNETLLPILKSPIPPPQNSLMSQKSVSFSNLLDAMDYSVLSSFLSENHSNPPGIGSSAGFNTENLEQQSSPMNNPNNSYTFQKNTQLNPSLSNMENMRPKRQFSSIDEETLYPSKKYLTSSCNFPSNINPQYENPQWNYLVKQSLLNQRLLLGPQLQFQG 350
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu6g03471 350 Gene3D NAC domain 17 171 IPR036093 GO:0003677|GO:0006355
Vimu6g03471 350 Pfam No apical meristem (NAM) protein 9 139 IPR003441 GO:0003677|GO:0006355
Vimu6g03471 350 FunFam NAC transcription factor 56 17 171 - -
Vimu6g03471 350 ProSiteProfiles NAC domain profile. 8 166 IPR003441 GO:0003677|GO:0006355
Vimu6g03471 350 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 7 266 - -
Vimu6g03471 350 MobiDBLite consensus disorder prediction 244 287 - -
Vimu6g03471 350 SUPERFAMILY NAC domain 4 166 IPR036093 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu6g03471 Vimu-Chr6 31561386 31562827 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu6g03471 4 350 NAC Transcription Factor Family AT3G04070 51.944 3.58e-109 320
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Vimu6g03471 NAM 1.5e-39 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu6g03471 - - vun:114194335 688.723