Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu6g03468 ATGGAGGAGCCTATTGTGTTGAACAAAGGTGAGGAGCCTCTAGATTTGCCTCCAGGTTTCAGGTTTCACCCCACTGATGAGGAGATAATTACTCATTATCTCACTGAGAAGGTGAAGGATAGTAGTTTCAGTGCAATTGCTATTGGAGAGGCTGATTTGAATAAGTGCGAACCTTGGGATTTGCCCAGTAAGTTAATTGTTTTTGTGACTTTGGTTTCTGTTTTAATTTTGAAGTTTGATGAGATATTGAGTGGGTTGAGTTTATGTTTTGCAGAGAGAGCCAAGATAGGGGAGAAAGAGTGGTACTTCTTCTGCCAAAAGGATAGAAAGTATCCAACTGGTATGAGAACCAATAGAGCAACAGAATCTGGGTACTGGAAGGCCACTGGAAAAGATAAGGAGATTTACAAAGGGAAAGGCAACCTTGTTGGGATGAAGAAGACCCTTGTGTTCTATAGAGGGAGAGCTCCAAAAGGTGAGAAGACCAATTGGGTCATGCATGAATTCAGATTGGAGGGCAAATTTGCAAGTTACAATCTTCCTAAGGCAGCAAAGGACGAATGGGTTGTGTCAAGGGTTTTTCACAAGAACACAGATGTCAAAAAGTCCTCAATTCCTGGTCTTCTGAGGATAAACTCTATTGGGGATGATCTTCTTGATTATTCTTCACTTCCACCTCTCATGGATCCTCCTTATGGCAACACCAACACCACTAACCCACTTTCATCAACTAAATCACAATCAGAGGGCTATTATCTTCCCAGTTTCTCCATCAACAACCATCACCAGCTTCTCATCAAGCCAGAAGACCACCACAGAAGCTATGAGATTCCCACAATCAGTTACACCTCCAACCAAGCCAATCTCAGCAACACCGTTAACCCAGTTGGAAGCAACACACTCTCACAACCTTCAAACATGTTCTCTGATTACTACGTGCACCAAAACAGGATCAGAAGTTCCATCATGCCGAGTATTGAAGGTTCGGGTTTCGGTACCAACCACGATCAAGCTATCCTTAGAGCATTTGCAGCCAAGAACAACGAGCATTTGGGTGGAATCTTGGAGAAACAGTGCAAGATGGAACAATTCTCTTCTAACCACTCACAAGACACAGGCTTAAGCAACGACAGAAACACGGAAACATCCTCGGTGGTTTCGAAGCAGGACATCATGGGAAGAAATCGGACATTGTACGAGGATCTTGAAGGTCCTCCTTCAGTTGCACCTCTCTCAGATTTGGAATGCTTGCAGTGGGATGACTACTGA 1269 0.4366 MEEPIVLNKGEEPLDLPPGFRFHPTDEEIITHYLTEKVKDSSFSAIAIGEADLNKCEPWDLPSKLIVFVTLVSVLILKFDEILSGLSLCFAERAKIGEKEWYFFCQKDRKYPTGMRTNRATESGYWKATGKDKEIYKGKGNLVGMKKTLVFYRGRAPKGEKTNWVMHEFRLEGKFASYNLPKAAKDEWVVSRVFHKNTDVKKSSIPGLLRINSIGDDLLDYSSLPPLMDPPYGNTNTTNPLSSTKSQSEGYYLPSFSINNHHQLLIKPEDHHRSYEIPTISYTSNQANLSNTVNPVGSNTLSQPSNMFSDYYVHQNRIRSSIMPSIEGSGFGTNHDQAILRAFAAKNNEHLGGILEKQCKMEQFSSNHSQDTGLSNDRNTETSSVVSKQDIMGRNRTLYEDLEGPPSVAPLSDLECLQWDDY 422
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu6g03468 422 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 15 302 - -
Vimu6g03468 422 Gene3D NAC domain 25 201 IPR036093 GO:0003677|GO:0006355
Vimu6g03468 422 SUPERFAMILY NAC domain 92 197 IPR036093 GO:0003677|GO:0006355
Vimu6g03468 422 MobiDBLite consensus disorder prediction 363 389 - -
Vimu6g03468 422 Pfam No apical meristem (NAM) protein 17 171 IPR003441 GO:0003677|GO:0006355
Vimu6g03468 422 ProSiteProfiles NAC domain profile. 16 196 IPR003441 GO:0003677|GO:0006355
Vimu6g03468 422 SUPERFAMILY NAC domain 13 65 IPR036093 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu6g03468 Vimu-Chr6 31516111 31517552 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu6g03468 1 420 NAC Transcription Factor Family AT5G18270 47.100 2.13e-105 313
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Vimu6g03468 NAM 1.1e-37 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu6g03468 - - aprc:113861501 669.077