Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu6g03461 ATGACTGAATGCCACCAAGAGCAGCAGCTCTTTGCCCCTTCTTGCTCAAGCAGCCTTGATGACCTCTTCTCTGCTCAGAACACGGAAGTGGATGTTGAGTTGGAGTGGCTTTCGGAGTTTGTTGAGGACTGCTTTTCGAGTCCCCCAAGTTTTGTGTTGGGAGGCGGTGGGGCTAAGAATAGTACAACAAGCATAAGCATAAGCACAGGCAGCAGCAGCAGCAAGGGTTGTTCTTCAGGCACATTGAAGAGAGCCGCCCAAGAGAATGAGTGTCCTTTGCAAAATTTTGCTGTGCCTGGGAAGGCGAGGAGCAAAAGGAAAAGGCTTTCGGCCCCTAGAACGAAGGACCCTTTGAGCGTATGGTCACACCATTTGAACCCAGAAAATGAAGCCTTGAGTTCTGACCCTCCACTCCTGAAACAGGCTTATTGGTTGGCTGACAGTGAACTGATGATGATGCCTAAGCCAAAGGAGGAGGAAGAAGAAGTGAGGAAAGTGGTGATTGGGGAGTGTGAGCTTGAAGGTAGCAGTGGTCAACAATCAATGCCAAGGAGATGCAGCCATTGCTTGGCTCAGAGGACCCCACAGTGGAGGGCAGGACCATTAGGTCCAAAGACACTTTGCAATGCATGTGGAGTTAGGTACAAGTCTGGTAGGTTGCTACCAGAGTATAGGCCAGCCAAGAGTCCTACTTTTGTTAGCTACTTGCACTCCAATTCCCACAAGAAAGTCATGGAGATGAGGATGGCTGTTTACTCTTCCATTTCTACTGACCATTAG 780 0.4936 MTECHQEQQLFAPSCSSSLDDLFSAQNTEVDVELEWLSEFVEDCFSSPPSFVLGGGGAKNSTTSISISTGSSSSKGCSSGTLKRAAQENECPLQNFAVPGKARSKRKRLSAPRTKDPLSVWSHHLNPENEALSSDPPLLKQAYWLADSELMMMPKPKEEEEEVRKVVIGECELEGSSGQQSMPRRCSHCLAQRTPQWRAGPLGPKTLCNACGVRYKSGRLLPEYRPAKSPTFVSYLHSNSHKKVMEMRMAVYSSISTDH 259
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu6g03461 259 FunFam GATA transcription factor 176 258 - -
Vimu6g03461 259 PANTHER GATA TRANSCRIPTION FACTOR 16 250 - -
Vimu6g03461 259 Pfam GATA zinc finger 186 220 IPR000679 GO:0006355|GO:0043565
Vimu6g03461 259 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 181 244 - -
Vimu6g03461 259 ProSiteProfiles GATA-type zinc finger domain profile. 180 216 IPR000679 GO:0006355|GO:0043565
Vimu6g03461 259 ProSitePatterns GATA-type zinc finger domain. 186 211 IPR000679 GO:0006355|GO:0043565
Vimu6g03461 259 SMART GATA_3 180 234 IPR000679 GO:0006355|GO:0043565
Vimu6g03461 259 Gene3D - 176 248 IPR013088 GO:0006355|GO:0008270
Vimu6g03461 259 CDD ZnF_GATA 185 232 IPR000679 GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu6g03461 Vimu-Chr6 31369478 31370418 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu6g03461 1 248 C2C2-Gata Transcription Factor Family AT4G32890 40.161 6.52e-42 144
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Vimu6g03461 GATA 6.5e-15 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu6g03461 - - gmx:100786479 374.4
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu6g03461 6 31369478 31370418 Vimu6g03461 6 31369478 31370418 ECH
Vimu6g03461 6 31369478 31370418 Vimu8g00022 8 2308852 2312656 PCT