Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu6g03454 ATGTTGCCGGTGAGTGTGTGCGATGACGAGGAATTTTACCATTCTTTGGGAGATACTCAAGTGGGCTATGATTTGAATGGGGAGAGGATGCCAGAGTTGAGAAGTGGAGCTAGAAGGTCTAAACGGCTTGGAGATCTTCAGACTGGTCCACTAACTGTTGAGCAAGGAGAGAATTGGGCACAACCTGCTCAGAATCGAACTAGGAGGAGAGTTGGAGGTGGAAGAGGAAGAGGTGGTAATGCCACAGCTGTAGGCAAAGGGCCTTCACCAGCTGTACCCACAAGGCGAACTGCAGCTGGTAGAGGCCGTGGAGCAAGATTGATTGATCTGGACCCTGAACCTTGTGAAGTTTTACCTGAACCTGTTGCTTTAGGGGCTCCAGAACCCATTTACAATCACGTAGAGGTAGTGGCCAATAATAACATTGCGATGGAGGGTGGAAGTGCAGATAAGGTGGCTGTAGCTGAGGAAGAACCCAGCACAACTCCTGTCCCTGAGAGGGTACAAGTTGGTAACTCTCCTATATATAAGATAGAAAGGAAATTGGGTAAGGGTGGTTTTGGTCAAGTTTATGTTGGTCGAAGGGTAACTGGTGGTGGCTCTGATCGAACAGGTCCTGATGCGGTTGAGGTTGCACTTAAGTTTGAGCACAGAAACAGTAAAGGTTGCAATTATGGACCTCCTTATGAGTGGCAAGTTTACAGTACTCTGAATGGCTGTTACGGAATTCCCTGGGTTCATTACAAGGGCCGACAAGGAGATTTCTACATTTTGGTCATGGACATGCTTGGGCCCAGTCTTTGGGATGTATGGAATTCTCTTGGCCAATCAATGTCTCCTAGTATGGCTGCATGTATTGCAGTAGAGGCTATATCAATTCTTGAGAAGCTCCACTTGAAAGGGTTTGTTCATGGGGATGTGAAACCAGAAAACTTTCTGCTTGGCCAGCCCGGATCTGCTGATGATAAGAAACTATATCTTATTGATCTTGGTTTAGCTTCTAGATGGAAGGATGCATCATCTGGTCTACATGTTGATTATGACCAGAGACCTGATATTTTCAGGGGAACGATAAGGTATGCTAGTGTACATGCTCATTTGGGTAGAACTGGAAGTCGAAGAGATGATCTCGAGTCTCTTGCATACACCCTAATATTTCTCATAAAAGGGAGATTACCATGGCAGGGTTATCAGGGTGACAATAAAAGCTTTCTTGTTTGTAAGAAAAAGATGGCCACTTCCCCGGAGTTGATGTGTTGCTTCTGTCCTGCACCATTTAAGCAGTTTCTTGAAGCTGTTACTAATATGAGATTTGATGAGGAGCCAAATTATTCCAAGCTTATATCATTTTTTGAAAGCTTGATTGAACCATGCACTCCATTGAGACCTATCAGAATAGATGGAGCTTTAAAGGTTGGTCAAAAAAGAGGTAGGATGCTTATAAATCTTGAAGAAGATGAACAACCTAAGAAGAAAGTGCGATTGGGGAGTCCTGCTACTCAATGGATATCAGTGTATAATGCACGTCGTCCCATGAAGCAGAGATATCACTATAATGTTGCAGACACTAGGCTCCGACAACATGTCGACAAGGGTATTGAGGATGGGTTGTATATAAGCTGTGTGGCCTCTGCAGCAAATTTATGGGCACTAATCATGGATGCAGGAACAGGTTTTTCTTCACAAGATTGGATAATGGAGCAATGGGAGAAAAATTACTACATCAGTGCAATCGCTGGTGCAGTTAATGGGAGTTCCTTGGTTGTCATGTCCAAAGGAACTCCTTATACGCAGCAATCATACAAAGTCAGCGAATCATTTCCTTTCAAATGGATAAACAAGAAGTGGAAAGAAGGATTCCATGTTACCTCAATGACTACTGCTGGCAGCCGCTGGGGTGTTGTCATGTCCAGGAATTCTGGGTATTCTGATCAGGTTGTGGAGATTGACTTTTTGTATCCAAGTGAAGGAATCCATCGTCGATGGGAGAACGGTTATCGGATTACTTCCATGGCTGCTACCAGTGACCAGGCAGCCTTCATACTGAGCATACCAAAGCGGAAATTGCTTGATGAAACTCAGGAGACGCTTCGTACATCTGCTTTTCCTAGTACCCATGTTAAGGATTTGCCCCCACTAGGTATTAATATATAG 2154 0.4434 MLPVSVCDDEEFYHSLGDTQVGYDLNGERMPELRSGARRSKRLGDLQTGPLTVEQGENWAQPAQNRTRRRVGGGRGRGGNATAVGKGPSPAVPTRRTAAGRGRGARLIDLDPEPCEVLPEPVALGAPEPIYNHVEVVANNNIAMEGGSADKVAVAEEEPSTTPVPERVQVGNSPIYKIERKLGKGGFGQVYVGRRVTGGGSDRTGPDAVEVALKFEHRNSKGCNYGPPYEWQVYSTLNGCYGIPWVHYKGRQGDFYILVMDMLGPSLWDVWNSLGQSMSPSMAACIAVEAISILEKLHLKGFVHGDVKPENFLLGQPGSADDKKLYLIDLGLASRWKDASSGLHVDYDQRPDIFRGTIRYASVHAHLGRTGSRRDDLESLAYTLIFLIKGRLPWQGYQGDNKSFLVCKKKMATSPELMCCFCPAPFKQFLEAVTNMRFDEEPNYSKLISFFESLIEPCTPLRPIRIDGALKVGQKRGRMLINLEEDEQPKKKVRLGSPATQWISVYNARRPMKQRYHYNVADTRLRQHVDKGIEDGLYISCVASAANLWALIMDAGTGFSSQDWIMEQWEKNYYISAIAGAVNGSSLVVMSKGTPYTQQSYKVSESFPFKWINKKWKEGFHVTSMTTAGSRWGVVMSRNSGYSDQVVEIDFLYPSEGIHRRWENGYRITSMAATSDQAAFILSIPKRKLLDETQETLRTSAFPSTHVKDLPPLGINI 717
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu6g03454 717 SMART serkin_6 176 451 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu6g03454 717 SUPERFAMILY Protein kinase-like (PK-like) 176 465 IPR011009 -
Vimu6g03454 717 MobiDBLite consensus disorder prediction 61 101 - -
Vimu6g03454 717 FunFam Casein kinase 1-like protein 148 497 - -
Vimu6g03454 717 ProSiteProfiles Protein kinase domain profile. 176 455 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu6g03454 717 Gene3D Transferase(Phosphotransferase) domain 1 141 494 - -
Vimu6g03454 717 Pfam Protein kinase domain 176 412 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu6g03454 717 PANTHER CASEIN KINASE-RELATED 176 689 - -
Vimu6g03454 717 CDD STKc_CK1 176 451 - -
Vimu6g03454 717 ProSitePatterns Serine/Threonine protein kinases active-site signature. 302 314 IPR008271 GO:0004672|GO:0006468
Vimu6g03454 717 ProSitePatterns Protein kinases ATP-binding region signature. 182 214 IPR017441 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu6g03454 Vimu-Chr6 31281622 31287818 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu6g03454 150 333 EF-hand Containing Proteins AT5G66210 27.638 7.67e-08 53.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CK1_CK1-Pl Vimu6g03454 Pkinase 1.9e-15 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu6g03454 - - gmx:100801967 1304.27
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu6g03454 6 31281622 31287818 Vimu6g03454 6 31281622 31287818 ECH