Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu6g03440 ATGGCATCATCATCATCATCATTATCACCACATAATTTGGAAGAATGTTCTTTTGAAGGCTCTAGTATCTTTGTCCCCTCACAAGATATTTTCTACAAATCAAGTGTTGAAGAACAAAAGAATGAAGAAGTAAAAACAATGAAAGAGAAGGTTGACAAATCTAAACAAGATCAAGCTTCCAATTCAAAATCCCATGTGGGGTTAGATTATGTTAAAATTTTCAATAATGAACCAGTTTGTGAATCAAAGGTGTTTGATTTTTTCAATCTGATGGAGACAGGGAACTCATCTTCTAGGAAAAATTACCCCAAAAGGAGAGATGAGCACAACAATGAAGTGAAATCATCAAAGGCTAAGACTTTTTCATGCAATTTTTGTAAGAAAGAGTTTTCTTCTTCACAAGCTTTGGGAGGGCATCAAAATGCCCACAAGCAAGAACGTGCTCTTGCAAAGGGTCATCAAGGAATTGAAGTTGGTGCTTTTGGACATCTTCATTTTCTCTATTATCCTTATCTCACAAACTCCTTTTATGGATCTTATAGTAGAACACTTGGGATTCGAATGGAGTCTATGATTCATAAGCCTTCTTACCGTTCATCTTCTCTAGGGTTTAGGTTTGATCATCATTCTTCTCTTGATGGATCGAGGAAGAAAGATTTGAATGCAAATAACGAAATTATGAGTATGGAAAGTGACACAACTTTGAGAAAACAAGGTGATAATCTTACTATTAGACAAAACACCTCTTTTCTTAGTAAATCCTCTACAAATGTTGCGATCAAATCAAACTCAACCTTGTCTCCATTGACTACTGTGCACTTTGATGGTCAATCCAAACAAGAAGGAACCCCTAATCTTAATTCTTCGTATGAGATTGATTTATCACTTAAGCTTTAG 897 0.3523 MASSSSSLSPHNLEECSFEGSSIFVPSQDIFYKSSVEEQKNEEVKTMKEKVDKSKQDQASNSKSHVGLDYVKIFNNEPVCESKVFDFFNLMETGNSSSRKNYPKRRDEHNNEVKSSKAKTFSCNFCKKEFSSSQALGGHQNAHKQERALAKGHQGIEVGAFGHLHFLYYPYLTNSFYGSYSRTLGIRMESMIHKPSYRSSSLGFRFDHHSSLDGSRKKDLNANNEIMSMESDTTLRKQGDNLTIRQNTSFLSKSSTNVAIKSNSTLSPLTTVHFDGQSKQEGTPNLNSSYEIDLSLKL 298
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu6g03440 298 PANTHER C2H2 AND C2HC ZINC FINGERS SUPERFAMILY PROTEIN 14 298 IPR044246 GO:0009788
Vimu6g03440 298 MobiDBLite consensus disorder prediction 36 59 - -
Vimu6g03440 298 Gene3D Classic Zinc Finger 95 157 - -
Vimu6g03440 298 Pfam C2H2-type zinc finger 121 145 - -
Vimu6g03440 298 ProSiteProfiles Zinc finger C2H2 type domain profile. 121 148 IPR013087 -
Vimu6g03440 298 Coils Coil 37 57 - -
Vimu6g03440 298 ProSitePatterns Zinc finger C2H2 type domain signature. 123 143 IPR013087 -
Vimu6g03440 298 SUPERFAMILY beta-beta-alpha zinc fingers 118 148 IPR036236 -
Vimu6g03440 298 MobiDBLite consensus disorder prediction 36 61 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu6g03440 Vimu-Chr6 31166729 31167625 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu6g03440 111 196 C2H2 Transcription Factor Family AT5G10970 54.545 7.31e-21 88.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Vimu6g03440 zf-C2H2_6 1.2e-05 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu6g03440 - - vra:106753736 559.296