Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu6g03432 ATGGAAATTCAATTCCAACAACCAAACCTGCAGCATCAGAAATCAGGCATTGCAGTCACCAGAGGAGGAAAGTTGAAAGGGCGAAGCAGAAGCAACAACAACAACAAATTTGTTGGGGTGAGACAAAGGCCTTCCGGGAGATGGGTGGCTGAGATCAAAGACACAACTCAAAAGATAAGAATGTGGCTTGGCACATTTGAAACAGCTGAGGAAGCAGCCAGAGCCTATGATGAAGCTGCATGCCTTCTTCGTGGATCAAACACTCGCACCAACTTCATCACTCATGTGTCCTTGGATTCCCCTCTTGCTTCTCGAATTCGGAATCTTCTTAACAACAAAAAAGGGATAAAGAAACAGGAAGATGCTAATGCTGTTGCTAATGTTAATAATGCAGCAGCTCCAAGAGTAAGCAGCACTGGCACTGCTAGTACTAGTACCACCACCACTACTACTACAACTACTACTAGTACTCATAGTAATTCAAACAATGGCAATGGCAACAATGAGAAGTCTCTTTCTACCATGACACCTCAAAGTGCAAATCTGTTTGATGATGCTTATAAACCAGATTTGAGTAATTGCAGGGAGGATTTTGGGTCAGGTTATCAATCCAATACTTCATGGGGTTTTGGACCTGTCTTTGATCGTTTTCCCATTGCTCAAATATTGGATGTACCAAAGATTGATGATTGCCTCACTGATGCAGCTGACTTGGAGCTTTCTGAATTTGAAAGAATGAAAGTTGAAAGACAGATATCAGCTTCACTCTATGCAATTAATGGGGTGCAAGAGTACATGGAAACTGTTCAGGACTCCAGTGAAACTCTCTGGGATCTTCCACCTTTATGCTCATTGTTCTGCTAA 864 0.4236 MEIQFQQPNLQHQKSGIAVTRGGKLKGRSRSNNNNKFVGVRQRPSGRWVAEIKDTTQKIRMWLGTFETAEEAARAYDEAACLLRGSNTRTNFITHVSLDSPLASRIRNLLNNKKGIKKQEDANAVANVNNAAAPRVSSTGTASTSTTTTTTTTTTSTHSNSNNGNGNNEKSLSTMTPQSANLFDDAYKPDLSNCREDFGSGYQSNTSWGFGPVFDRFPIAQILDVPKIDDCLTDAADLELSEFERMKVERQISASLYAINGVQEYMETVQDSSETLWDLPPLCSLFC 287
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu6g03432 287 PRINTS Ethylene responsive element binding protein signature 37 48 IPR001471 GO:0003700|GO:0006355
Vimu6g03432 287 PRINTS Ethylene responsive element binding protein signature 59 75 IPR001471 GO:0003700|GO:0006355
Vimu6g03432 287 ProSiteProfiles AP2/ERF domain profile. 36 93 IPR001471 GO:0003700|GO:0006355
Vimu6g03432 287 Pfam AP2 domain 36 85 IPR001471 GO:0003700|GO:0006355
Vimu6g03432 287 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 28 253 - -
Vimu6g03432 287 FunFam ethylene-responsive transcription factor RAP2-11 35 94 - -
Vimu6g03432 287 Gene3D AP2/ERF domain 35 94 IPR036955 GO:0003700|GO:0006355
Vimu6g03432 287 MobiDBLite consensus disorder prediction 128 175 - -
Vimu6g03432 287 MobiDBLite consensus disorder prediction 1 16 - -
Vimu6g03432 287 SUPERFAMILY DNA-binding domain 36 93 IPR016177 GO:0003677
Vimu6g03432 287 MobiDBLite consensus disorder prediction 1 39 - -
Vimu6g03432 287 SMART rav1_2 36 99 IPR001471 GO:0003700|GO:0006355
Vimu6g03432 287 CDD AP2 36 92 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu6g03432 Vimu-Chr6 31099301 31100568 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu6g03432 10 111 AP2-EREBP Transcription Factor Family AT5G19790 69.608 1.08e-40 140
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Vimu6g03432 AP2 6.5e-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu6g03432 K09286 - gmx:100796898 447.203
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu6g03432 6 31099301 31100568 Vimu6g03432 6 31099301 31100568 ECH
Vimu6g03432 6 31099301 31100568 Vimu8g00046 8 3213468 3214343 PCT