Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu6g03425 ATGAATTCTTCCGACTACGAAACCATTGATTCCATTATCATAGGCTCGAACAACACGCTGAAGGTCTGTTTCAATAAGTCTATCTATCCCGGTTCCGCCCTTTGGCTGGAAAATTCTCTGGAGGAAACACTTCCTTCATTTGTCCTGCAATTCGCCATTATCCTAGCTCTCAACCGCTTTCTGTTCGTTCTTGCAGAACAATGCCATGTACCTCGCATTGTTGCCAATATTTTTACTGGTTTTCTGTTAGGTACATCTGTTATGGGACGTTGGAAAGTTTTCATGGACCAGTTATTTCCTTACAGCAACATGATACCATTGGAGACGGTAGGATCGTTGGCCCTTGTTTACTACGTGTTTTTGGTGGGCTTAGAGATAGACTTGAATCCAATAAAGACGTTGAACAGAAAGACCAAAGTTATAGCCATTGCAAGCGCCATCTTCCCCATACCAATAGGGTTTGGGTTGTACTACATGCTTGTCACGGACATGGGGCGAAAACATTTGTCCAGTGACAACGTTAGACCAAAGGGTGCAATATTATGGGGAATCGCCCTTTCTTGCAGCAGTGAGTTCCCTGAGATTGCAAAGATCCTTTCAGATCTGAAGCTGCTTCTCACGGAGAACGGACAACTGGCTCTCACAGCTTCTCTCCTTAATGACTTGATTTCATGGACTCTTCTTGTGTTGACCCTGTCACAATTCTACCACGCTTCTGTGGTATCGTTTGTCATCACTGTGGTGATTCTGTTGTTGTGTTTTATGGTACTTAACCCCCTTTTCAAGTGGATATTCAACAATGTAGGAATGGCCGATAAAGATTTCTTGGAGTCACAAGTCATATTTGTGCTGAATGTGGTTTTGGTTGTTGGCTTGTTAACTGATGGTCTGGGCGTGCTTTCGATAACGGGGGCTTTCTTTTTGGGTGTTGTGATGCCTCAGGGGTCGCTTAACAATGCGGTCCAGGACAAGGTGCAGGATTTTGTGGCTGTGCTGATGATGCCTTTGTTCTTTGTGATAGTTGGAGAGAGGATTAGGATCCAAGACTTGGCCTTGCAAACACATTGGACAACTGTGTTTGTGGTGGTTCTGTTGGCCATGGTGACCAAGATTTTGTGCACTATGGCTGTCACTTGGTTCTACCGGATGCCGCACATGGAAGGACTCTCCCTTGCACTGCTCATGAACACTAAAGGAATAATGCCATTGATCATTCTCTGCACCGGCAGGGACAGACATGAACTGGACAATCAAACCTTTGGGGTGATGGTGTTGGCGTGCTGGTTAATGACAATCCCCGTGGGACCTGTCTCATCAGCTTTAACAAATGCATTGAAAAGCAGAATGGTTATGGGAAGTTTACGCAGGACGCATGACACGCAACCAGACTCACCCCTGAAACTACTGGCCTGCATCCACGCAAAGCGCGATGCCAACGTGATTATCGACCTCTTAAAAGCCTCATGTCCCTCTGTCAGAAATCCAATCCAACTTCTAGCAGTGGAACTGAACAAAACAACCAATCGCCCCGCCGCGTCACTCATCATAAGGAACGCTCGAAACACATCCTTCACCTCGAGATCCTTGAAGCTAGGCTCCGAAGACACCCTGGGAAGCTTCGACAATCTCAGCCAAGCCATCTTCGCAGAGAAAATGAGTATAATGTCAGACTACAATACCATGCACCAGGACATCATCAACCTCGCAAGACACAGAGGTGTGACACTTATCTTATCGACATTCCACAAGCAACCAACCTACGATGGTTTAGGAGCAGGAGCTGCAACTGCAAGAGCTGTCAACATCATAAACCGCGACCATGCAAGCAAAGACGAGAAGAAAGTGGTGTTAGAGAGTCTAGTTAAGGGTGCACCGTGTTGTTTGGCGATATTAGTGGACAGAGGGGTGAGACGTCGCAAGCATTCGAAGGAGCTACGCGTGGCTATGTTCTACGTTGGAGGTGCTGATGACCGTGAAGCTCTATCTTATGCATGGAGGATGACAAGAAGTTCAGAGGTGAATTTAACGTTGGTGAGGCTTGTTTGGGATAACCCAAATGACGAGTTTGATGAAACGGATAAGGAATTCCTGAAGGGGTTTATGAAAAAGATGGGGGATTCGGTAAAGGTGAGGTATTTGGAGAAGGTGGTGAGGGATGAGGACAAAACAGTGAAGCTTTTGAACAAGATAGCGAAAAAAGGGTTTGATTTGTTTGTTATAGGAAGAGGGCATGGGAGGAAGATGTCATTGGCACAAACGGTGGATCCTGTGTTGGAGGAGCCTGTGTTAGGGCCTCTTGGGGATGCTTTGACGGATCTTAACTCTGCGGCTGAAACCTCCATTTTGATATTCCAAAGACAGGGTGAACAAGTGGATGGGAAGCATGTGAGGTCAGCATCATCTCCTGAAGGAAAACTCTTTACTTGCATGATGGAGCAGATGTTAATGTGCCCTTCAACCAGGTCTACTGTCATTTTACCTCAGTCCACCTGA 2493 0.4625 MNSSDYETIDSIIIGSNNTLKVCFNKSIYPGSALWLENSLEETLPSFVLQFAIILALNRFLFVLAEQCHVPRIVANIFTGFLLGTSVMGRWKVFMDQLFPYSNMIPLETVGSLALVYYVFLVGLEIDLNPIKTLNRKTKVIAIASAIFPIPIGFGLYYMLVTDMGRKHLSSDNVRPKGAILWGIALSCSSEFPEIAKILSDLKLLLTENGQLALTASLLNDLISWTLLVLTLSQFYHASVVSFVITVVILLLCFMVLNPLFKWIFNNVGMADKDFLESQVIFVLNVVLVVGLLTDGLGVLSITGAFFLGVVMPQGSLNNAVQDKVQDFVAVLMMPLFFVIVGERIRIQDLALQTHWTTVFVVVLLAMVTKILCTMAVTWFYRMPHMEGLSLALLMNTKGIMPLIILCTGRDRHELDNQTFGVMVLACWLMTIPVGPVSSALTNALKSRMVMGSLRRTHDTQPDSPLKLLACIHAKRDANVIIDLLKASCPSVRNPIQLLAVELNKTTNRPAASLIIRNARNTSFTSRSLKLGSEDTLGSFDNLSQAIFAEKMSIMSDYNTMHQDIINLARHRGVTLILSTFHKQPTYDGLGAGAATARAVNIINRDHASKDEKKVVLESLVKGAPCCLAILVDRGVRRRKHSKELRVAMFYVGGADDREALSYAWRMTRSSEVNLTLVRLVWDNPNDEFDETDKEFLKGFMKKMGDSVKVRYLEKVVRDEDKTVKLLNKIAKKGFDLFVIGRGHGRKMSLAQTVDPVLEEPVLGPLGDALTDLNSAAETSILIFQRQGEQVDGKHVRSASSPEGKLFTCMMEQMLMCPSTRSTVILPQST 830
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu6g03425 830 Gene3D - 561 763 - -
Vimu6g03425 830 Pfam Sodium/hydrogen exchanger family 53 432 IPR006153 GO:0006812|GO:0015297|GO:0016020|GO:0055085|GO:1902600
Vimu6g03425 830 PANTHER CATION/H + ANTIPORTER 28 788 - -
Vimu6g03425 830 Gene3D - 45 449 IPR038770 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu6g03425 Vimu-Chr6 31031220 31034445 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu6g03425 1 786 Antiporter Super Family AT2G13620 32.039 1.38e-133 416
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu6g03425 K26731 - gmx:100780176 1177.93