Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu6g03420 ATGGCTCCAGAATATGCTATGGAAGGATTGTATTCAGTGAAATCTGATGTTTTCGCTTTTGGAGTTCTTCTACTAGAAATCATACGTGGGAAAAGGAACAGTGGATTCCATCTTTCAGAACATGGTCAAAGCCTTCTTGTATATGTGAGTTTTCTGATATCATACCATCAAGAAACAGATACTAGAAAAAGCTTGGAAATGTTGGATCCAATGCTGGAAAAGACACAGAAAGCCAGTGAAGTTATGAAATGCATACACATTGGTTTATTGTGTGTTCAAGAAGATGCAGCTGATAGACCAACCATGTCCACAGTTGTTGTCATGATGGCAAGTGACGCAATGGCCCTTCCTAACCCTAATCATCCTGCATTTTCAGTTGGAAGAAAGATCAAAGAAGAAGAATCAACATCAAAAGGATCCAAGGATCCTTCTGTTAATGATGTAACAATATCAAACATTTTACCAAGGTAG 471 0.3822 MAPEYAMEGLYSVKSDVFAFGVLLLEIIRGKRNSGFHLSEHGQSLLVYVSFLISYHQETDTRKSLEMLDPMLEKTQKASEVMKCIHIGLLCVQEDAADRPTMSTVVVMMASDAMALPNPNHPAFSVGRKIKEEESTSKGSKDPSVNDVTISNILPR 156
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu6g03420 156 MobiDBLite consensus disorder prediction 129 156 - -
Vimu6g03420 156 Pfam Domain of unknown function (DUF3403) 111 156 IPR021820 GO:0004674
Vimu6g03420 156 Gene3D Transferase(Phosphotransferase) domain 1 1 118 - -
Vimu6g03420 156 SUPERFAMILY Protein kinase-like (PK-like) 1 124 IPR011009 -
Vimu6g03420 156 ProSiteProfiles Protein kinase domain profile. 1 124 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu6g03420 156 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 1 152 - -
Vimu6g03420 156 MobiDBLite consensus disorder prediction 141 156 - -
Vimu6g03420 156 Pfam Protein tyrosine and serine/threonine kinase 1 107 IPR001245 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu6g03420 Vimu-Chr6 30989028 30989634 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu6g03420 1 156 Receptor kinase-like Gene Family AT4G23140 44.720 1.21e-41 145
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Vimu6g03420 PK_Tyr_Ser-Thr 1.1e-09 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu6g03420 - - gmx:100813642 206.068