Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu6g03401 ATGGACAGGCTAATAAAAGTAGACCCGACGAACACTGTTTCGATAAGGATGGAGCCAGGCCAAAAATGCCACGGCAAAATTACCTTACGCAATGTTATGTACACGATGCCGGTGGCGTTCAGACTTCAACCGTTGATCAAAACGCGTTACACTGTGAAGCCTCAATCTGGGATCATATCCCCGTTAGCCTCAGTAACCATAGAAATCCTCTACCATCTCCCACAAGGCTCCACTCTCCCTCACTCCTTCCCTCACTCCGAAGACTCCTTCCTCCTCCACAGCGTCGTGGTTCCCGGCGCCACCATCAAAGAACCCTCCTCCATGTTCGAGTCCGTTCCCTCCGACTGGTTCACGGCCAAGAAGAAACAAGTCTTCATCGACAGCGGCATCAAGATCATCTTCGTCGGCTCGCTCATTCTCGCTCAGCTAGTCCACGATGGCTCCATTGACGAAATCAGGGAAGCTCTCGAACACAGTGAAGCTTCATGGAAAGCCGTTGACTCCGTTGACTCAAACGGCGACACGCTCCTTCACGTGGCGATTTCCAAGAGCAGACCCGACCTAGTTCAATTACTCCTCGAGTTCAACGCAGACATCGAAGCAAAAGATCGTTCTGGCATGACCCCTCTGGAAAAGGCCTGCTCTTTGGGCGAAGAACTGACCGTTGAGCTTCTGTTAGCTCACAAGGCCACCACAGAGAGAACGGAAACCTCGTCTTTGGGTGCGATTCATTTGGCGGCGCGAGAAGGGCACGTGGAGGTTCTGCGTCTGTTGTTACTCAAAGGCGCGAATGTTGACTCGTTGACCAAAGACGGCGAAACCGCGCTGCACCTTGCAGTGAAGCATGGTGAGAGAGATTTCGTGAGGATGTTGCTGGCGAACGACGCGCGAACCGACGTTCGCGACTCGCGAGAGGGTGACACGTGTCTGCACGTGGCGGCGGGTGTGGGGGACGAGGAGATGGTGAAGCTGTTGCTGAAGAAAGGGGCGAACAAGGACGTGAGAAACTTCGCGAGTAGGACAGCGTACGAC 1032 0.5397 MDRLIKVDPTNTVSIRMEPGQKCHGKITLRNVMYTMPVAFRLQPLIKTRYTVKPQSGIISPLASVTIEILYHLPQGSTLPHSFPHSEDSFLLHSVVVPGATIKEPSSMFESVPSDWFTAKKKQVFIDSGIKIIFVGSLILAQLVHDGSIDEIREALEHSEASWKAVDSVDSNGDTLLHVAISKSRPDLVQLLLEFNADIEAKDRSGMTPLEKACSLGEELTVELLLAHKATTERTETSSLGAIHLAAREGHVEVLRLLLLKGANVDSLTKDGETALHLAVKHGERDFVRMLLANDARTDVRDSREGDTCLHVAAGVGDEEMVKLLLKKGANKDVRNFASRTAYD 344
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu6g03401 344 ProSiteProfiles Ankyrin repeat region circular profile. 305 336 - -
Vimu6g03401 344 Pfam Ankyrin repeats (3 copies) 243 336 IPR002110 GO:0005515
Vimu6g03401 344 Pfam MSP (Major sperm protein) domain 5 108 IPR000535 -
Vimu6g03401 344 ProSiteProfiles Ankyrin repeat region circular profile. 172 204 - -
Vimu6g03401 344 ProSiteProfiles Ankyrin repeat profile. 271 303 IPR002110 GO:0005515
Vimu6g03401 344 ProSiteProfiles Major sperm protein (MSP) domain profile. 4 135 IPR000535 -
Vimu6g03401 344 ProSiteProfiles Ankyrin repeat region circular profile. 271 302 - -
Vimu6g03401 344 SUPERFAMILY PapD-like 2 149 IPR008962 -
Vimu6g03401 344 Gene3D - 135 236 IPR036770 -
Vimu6g03401 344 PRINTS Ankyrin repeat signature 321 335 IPR002110 GO:0005515
Vimu6g03401 344 PRINTS Ankyrin repeat signature 272 287 IPR002110 GO:0005515
Vimu6g03401 344 Gene3D - 237 344 IPR036770 -
Vimu6g03401 344 SUPERFAMILY Ankyrin repeat 133 344 IPR036770 -
Vimu6g03401 344 ProSiteProfiles Ankyrin repeat profile. 305 337 IPR002110 GO:0005515
Vimu6g03401 344 ProSiteProfiles Ankyrin repeat profile. 238 270 IPR002110 GO:0005515
Vimu6g03401 344 ProSiteProfiles Ankyrin repeat region circular profile. 238 266 - -
Vimu6g03401 344 Gene3D Immunoglobulins 1 124 IPR013783 -
Vimu6g03401 344 Pfam Ankyrin repeats (many copies) 174 215 IPR002110 GO:0005515
Vimu6g03401 344 ProSiteProfiles Ankyrin repeat profile. 172 204 IPR002110 GO:0005515
Vimu6g03401 344 PANTHER ANK_REP_REGION DOMAIN-CONTAINING PROTEIN-RELATED 142 342 - -
Vimu6g03401 344 SMART ANK_2a 238 267 IPR002110 GO:0005515
Vimu6g03401 344 SMART ANK_2a 172 201 IPR002110 GO:0005515
Vimu6g03401 344 SMART ANK_2a 305 334 IPR002110 GO:0005515
Vimu6g03401 344 SMART ANK_2a 271 302 IPR002110 GO:0005515
Vimu6g03401 344 SMART ANK_2a 205 234 IPR002110 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu6g03401 Vimu-Chr6 30715699 30717584 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu6g03401 146 326 Miscellaneous Gene Families AT3G12360 34.595 2.77e-19 87.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu6g03401 - - gmx:100778044 594.349
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu6g03401 6 30715699 30717584 Vimu8g00609 8 12674283 12675592 PCT