Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu6g03390 ATGCCTGAAGAAACCACGTCGATTGATTACGTCATGGAGGCCGCATCTGGGGCCCACTTCTCCGGCCTTAGACTCGACGCCCTGCTACCTTCCTCCGCCACCGCCTCCGCCGCTCCTGATTCAACCCTAGCCTCGGATTCCCAACCCAATCGCCCTTTCGTTATTGGAGTTTCCGGCGGTACTGCCTCCGGGAAAACCACTGTCTGCGACATGATCATTCAGCAGCTTCACGATCACCGCGTCGACTCGTTTTATCGTGGGCTGAGACCCGAAGAGTTGGAACGTGTTCATGAGTACAATTTCGATCACCCTGATGCTTTTGACACCGAACAGTTGTTAGAGTGCATGGGGAAACTCATCAGTGGCCAGGGCGTGCATGTTCCCATCTATGACTTCAAGAAACATCAGCGTTCTTCTGATAGTTTTCGCCAGGTTAATGCCTCTGATGTGATTATATTGGAGGGGATTCTTGTATTCCACGATCAGCATGTGCGGGATCTGATGAACATGAAGATCTTTGTAGACACAGATGCTGATGTGAGGCTTGCACGTAGAATTAGACGTGACACAGTTGAGAGGGGCAGGGATATAAACTCTGTTCTTGAACAGTATGCAAAATTTGTTAAGCCTGCATTTGATGATTTTGTTCTACCATCAAAAAAGTATGCTGATGTGATCATTCCTCGTGGAGGTGATAATCATGTAGCCATTGATTTGATCGTGCAACATATTCGGACAAAGCTTGGTCAACATGATCTATGCAAAATATATCCAAATGTCTATGTTATTCAGTCTACATTCCAGATAAGAGGGATGCATACATTGATTAGGGACCGAGACATATCAAAGCATGATTTCGTGTTTTATTCAGATCGTCTTATACGCCTGGTTGTTGAGCATGGTCTAGGTCATCTGCCTTTCACCGAAAAGCAAGTGGTTACTCCCACAGGATCTGTCTATACTGGTGTTGATTTCTGCAAAAAGTTGTGTGGTGTTTCAATTGTACGAAGTGGTGAGAGCATGGAAAATGCACTTCGTGCATGTTGTAAAGGCATTAAAATTGGTAAAATTCTGATTCACCGGGATGGAGACAATGGAAAACAGCTTATATATGAAAAGCTTCCCAAGGATATTTCAGAACGGCATGTTTTGCTTCTGGACCCGGTCCTGGCAACAGGTAACTCTGCAAACCAAGCAATTGAATTACTCATTCAGAAAGGAGTACCAGAAAACCACATTATATTCCTGAACCTCATTTCTGCTCCTGAGGGAATCCATTGCGTGTGTAAAAGGTTTCCGTCATTGAAGATTGTCACATCTGAGATTGATGTTGAACTGAATGAAGAGTACCGTGTTATCCCAGGATTAGGTGAATTTGGTGATCGCTACTTTGGCACCGATGATTGA 1407 0.4478 MPEETTSIDYVMEAASGAHFSGLRLDALLPSSATASAAPDSTLASDSQPNRPFVIGVSGGTASGKTTVCDMIIQQLHDHRVDSFYRGLRPEELERVHEYNFDHPDAFDTEQLLECMGKLISGQGVHVPIYDFKKHQRSSDSFRQVNASDVIILEGILVFHDQHVRDLMNMKIFVDTDADVRLARRIRRDTVERGRDINSVLEQYAKFVKPAFDDFVLPSKKYADVIIPRGGDNHVAIDLIVQHIRTKLGQHDLCKIYPNVYVIQSTFQIRGMHTLIRDRDISKHDFVFYSDRLIRLVVEHGLGHLPFTEKQVVTPTGSVYTGVDFCKKLCGVSIVRSGESMENALRACCKGIKIGKILIHRDGDNGKQLIYEKLPKDISERHVLLLDPVLATGNSANQAIELLIQKGVPENHIIFLNLISAPEGIHCVCKRFPSLKIVTSEIDVELNEEYRVIPGLGEFGDRYFGTDD 468
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu6g03390 468 NCBIfam uridine kinase 52 247 IPR000764 -
Vimu6g03390 468 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 48 240 IPR027417 -
Vimu6g03390 468 CDD PRTases_typeI 324 439 IPR000836 -
Vimu6g03390 468 Gene3D - 49 250 IPR027417 -
Vimu6g03390 468 Pfam Uracil phosphoribosyltransferase 265 466 - -
Vimu6g03390 468 Pfam Phosphoribulokinase / Uridine kinase family 54 235 IPR006083 GO:0005524|GO:0016301
Vimu6g03390 468 SUPERFAMILY PRTase-like 250 467 IPR029057 -
Vimu6g03390 468 PRINTS Uridine kinase signature 215 228 - -
Vimu6g03390 468 PRINTS Uridine kinase signature 52 69 - -
Vimu6g03390 468 PRINTS Uridine kinase signature 122 137 - -
Vimu6g03390 468 PRINTS Uridine kinase signature 179 189 - -
Vimu6g03390 468 PRINTS Uridine kinase signature 193 204 - -
Vimu6g03390 468 FunFam Uridine kinase 251 466 - -
Vimu6g03390 468 PANTHER URIDINE KINASE 43 377 - -
Vimu6g03390 468 FunFam Uridine kinase 49 250 - -
Vimu6g03390 468 CDD UMPK 54 247 IPR000764 -
Vimu6g03390 468 Gene3D - 251 466 IPR029057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu6g03390 Vimu-Chr6 30544255 30550878 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu6g03390 1 468 PRT Gene Family AT5G40870 84.265 0.0 818
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu6g03390 K00876 - gmx:100780005 872.463