Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu6g03388 ATGCACGGCTTGATGGATGCACCTCCGAACCCTGATGAGAACACTAGTGGCTTTCTCGAAAAAGAAGAGATAAGACTAGAGGAGGTTTCCAAGGGTAGAGTTATTGCACGATTTGGTGAGGGAGAGGTCGTCGAAAGGACTTCAGATCAAGATTTTCATCTGGATACAAGTAAAACAAATATATTAGATCCATTAGGTGGTGTTCAAATTGAAAGAGACAAGATGGCTGGCCAATCAAACCATGAGCTTTCACTGTTTTCAGCAGAGGAGCTTGAGTTCATTGCTGAGGATGAGATCGTGGACATTGTGCCCAATCTAAAAATGGGACCTCTCAATTTCATTTGTGGAGATTTTGGCCCATTTACGCCTCAGATTGTTACTCAAGTACCGCTGTGGTTGGCCATTGCTCTCAAGAAGAGAGGCAAGTGCTCCATTCGGCCTCCCCAGTGGATGTCCGTAGGTGAGCTTCCTTTCTTTATTATTCCTCCTTCTCTTCTCTCCTCCCTAGACTCCTCCCAACAATCTAACAATAACAACGATAATGCATTAACTGTGAACATATTCATAGGTTAG 573 0.438 MHGLMDAPPNPDENTSGFLEKEEIRLEEVSKGRVIARFGEGEVVERTSDQDFHLDTSKTNILDPLGGVQIERDKMAGQSNHELSLFSAEELEFIAEDEIVDIVPNLKMGPLNFICGDFGPFTPQIVTQVPLWLAIALKKRGKCSIRPPQWMSVGELPFFIIPPSLLSSLDSSQQSNNNNDNALTVNIFIG 190
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu6g03388 190 PANTHER DNA REPLICATION COMPLEX GINS PROTEIN PSF2 81 156 IPR007257 GO:0005634|GO:0006260
Vimu6g03388 190 CDD GINS_B_Psf2 87 148 - -
Vimu6g03388 190 Gene3D - 86 151 - -
Vimu6g03388 190 FunFam DNA replication complex GINS protein PSF2 86 151 - -
Vimu6g03388 190 Pfam GINS complex protein 127 156 IPR021151 -
Vimu6g03388 190 SUPERFAMILY PriA/YqbF domain 86 145 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu6g03388 75 156 Core DNA Replication Machinery Family AT3G12530 67.073 2.39e-36 122
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu6g03388 K10733 - gmx:100780528 143.665