Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu6g03386 ATGAATGGCGTGCTATCTTCTGATGGACATGATTTCTTCACATCCTATGATGAGTTTTATGAGAGTTTTGATGCTATGGGACTGCAGGAGAATCTTCTGAAAGGCAGTTACACATATGGTTTCAAAAAGCCTTCAGCCATTCAACAAAGGGGGATAGTTTCCTTCTGCAAGGGACTTGATATTATTCAACAGGCTCAGTCTGGAACTGGGAAGACAGCCACTTTCTGCTCCGGTATTCTGGAGCAACTTGACTATAGCTTGACGCAATGCCAGGCCTTGGTTTTAGCACTAACTCTTGAGCTTGCTCAGCAGATTGAAAGGTTATGCGGGCACTTGGAGATTATCTTGGTGTTAAGGTTCATGCTTGTGTGGGAGGTACCAGTGTCTGTGAAGACCAACGCATTTTATCTAGCGGTGTTTATGTCGTGGTTGGTACCCCTGGTCGTGTGTTTGGTATGCTTCGTAGGCAATCACTCCAACCAGATCACATCAAGATGTTTATATTGGATGAGGCTGATGAGATACTTTTTCGAGGTTTTAAGGATCAAATATATGATATATTCCAGCTGCTGCCATCTAAGATTCAAGTGGGAGTTTTCTCAGCCACAATGCCTCTTAAGGCCCTTGAGATCACGAGGAAGTTCATGA 648 0.4383 MNGVLSSDGHDFFTSYDEFYESFDAMGLQENLLKGSYTYGFKKPSAIQQRGIVSFCKGLDIIQQAQSGTGKTATFCSGILEQLDYSLTQCQALVLALTLELAQQIERLCGHLEIILVLRFMLVWEVPVSVKTNAFYLAVFMSWLVPLVVCLVCFVGNHSNQITSRCLYWMRLMRYFFEVLRIKYMIYSSCCHLRFKWEFSQPQCLLRPLRSRGSS 215
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu6g03386 215 PANTHER RNA HELICASE 20 111 - -
Vimu6g03386 215 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 15 112 IPR027417 -
Vimu6g03386 215 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 21 49 IPR014014 GO:0003724
Vimu6g03386 215 Pfam DEAD/DEAH box helicase 46 107 IPR011545 GO:0003676|GO:0005524
Vimu6g03386 215 Gene3D - 11 131 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu6g03386 Vimu-Chr6 30482009 30482656 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu6g03386 1 108 Eukaryotic Initiation Factors Gene Family AT3G13920 77.982 7.68e-53 173
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu6g03386 K03257 - gmx:112999960 186.808