Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu6g03384 ATGGTTTTCAGTTTCCAGGCTTTACTTGTATTTGGAGATTTACTCCTGAATTGTATGGTTGAAAAAGTTTTGGATTTTGTTCAATTGGAGCAATTACAGTCCTCTCACTCTCAGACTCTTCTCAGAATTCAGCAGCTATTGAACTTTCCTGCTGCTTTGAGCAACTGGAACAACGACACAGATTTTTGTAACACAGATTCAAACTCTTCCCTCTCTGTAGTGTGCTATGAAGACACCATAACACAGCTTCACATAATAGGTGAAAGAAGAGATTCACCTCTCCCTAGAAATTTCTCAATAAATTCCTTTGTCACAACACTGGTAAGGCTTCCCAGTTTGAAAGTCCTCACATTGGTTTCTCTGGGTATTTGGGGTCCTTTGCCTGGTAAGATAGCTCGTTTGTCATCCCTGGAAATACTCAACATGAGTTCCAATTTTCTCTATGGTTCCATTCCTCAAGAACTTTCTTCACTGAAAAGTCTCCAAACACTCATTTTTGACAACAACATGCTGGCTGAAACATTTCCTCCTTGGCTTGATTCACTTCCGGCCTTAACTGTGCTAAGTTTGAAGAATAACTTGTTCAATGGATCTCTTCCAAATTCTCTTGGCAATGTGGAGAATCTGAGAGCTCTTTCACTTTCTCATAATCACTTGTATGGGGTGCTGCCTGATTTTAGTCGTTTGAAGAATCTTCAAGTGCTTGAGTTGGATGACAATGCCTTTGGACCTCAGTTTCCTCAACTTGGTAACAAGTTGGTTACGCTAGTGCTAAGAAACAATAGGTTCAGGGATGGTATTCCTGCTGAATTGAGCTCATACTATCAGCTAAAACGTTTGGATATATCATCCAATGCATTTGTGGGGCCATTTCCACCAGGATTGTTGTCACTTCCTTCTATTACTTATCTGAATATTTCTGGTAACAAATTAACTGGGATGCTTTTTGAGAATCTGTCTTGCAATTCAGAGCTTGATGTGGTGGATTTATCCTCAAATCTTTTGACTGGGAGCTTACCTAAATGTTTAGTGTCAAATTCCAGTGATAGCACTTTCCTGTATGCTAGAAATTGTCTAGACAGTGCGAATCAAAATCAGCAGCCGCAGCCTTTTTGCCACACTGAGGCCCTAGCTGTGGGAATATTACCTGAGAGAAAGAAACACAGACAAGTATCTAAGGTAGTTCTTTCCCTAGGCATAGTAGGTGGTACTCTTGGAGGAGTAGCACTTGTTTTGCTAATTTTCTTTATTGTTAGAAGAGGAAATGCTAGAATCAAAACGAAGAACCCTCCAACAAGATTAATATCAGAAAATGCTGCTTCTGGTTACACTTCTAAGTTGCTTTCTGATGCAAGGTATATATCTCAAACAAAGAAGTTGGGAGCAGTTGGCCTGCCAAGTTATCGAAGTTTCTCATTGGAAGAGATTGAGGCAGCTACAAACTACTTTGACACAGCTTCTTTAATGGGTGAAGATTCTTATGGGAAGATGTACAGAGGTCAGCTGAAGAATGGTTCGGTTGTTGCTATTCGATGTGTAGAAATGACAAAGAAATACAGCACTCAAAACTTTGTGAACCACATAGAGCTGATATCAAAACTCAGGCATCGTCATTTAGTCAGTGCTATTGGACACTGCTTTGAATGTTCTCTGGATGATTCGAGTGTCAACAAAGTATTTCTTGTCTTTGAATATGTACCAAATGGCACACTCAGGGATTGGATCTGTGATGAAAATGTTAGAAAATGCTTGAGTTGGAGCCAACGCATTGGAGCTGCAATTGGAGTGACAAAGGGAATCCAGTTTTTGCATACAGGGATAGTCCCTGGTGTATATTCCAACGATCTCAAGATAGAAGATGTTTTGATGGATCAGAATCTTGTTGCGAAAATCAGCAGTTATCATCTGCCTTTGTTATCTAACATGGGGAAGGTTCGACATGGAAATTCTTCAAGTGGATTGAAACACTCTAGCAACAATAAAAGTGTAAAGCATGAAGACAAGTCTGATATATACGACCTTGGAGTGATACTACTCGAACTCATTCTAGGAAGGCAAATAAAGACAGAAAATGATGCAGACGCTTTTAGAGATCTGTTGCAAGCAAGCTTAGGAGCAGATGAAGAGGGTAGGAGGAATGTGGTTGATACAGCAATTCGCAAGGCATGCTTGGATCAATCATTGAAGACAATGATGGAGATATGTGTGAGGTGTATGGTTAAAGAGCCAGAAGATAGGCCCTCTATAGAGGATGTTCTGTGGAACTTGCAGTTTGCATCTCAAGTGCAGGATGCATGGAGAGTGGATTCACAAAGTAGTGAAGGGTCACCAGGCTCAGAATCTCGAGGACTTCCCTTTCAGTAG 2364 0.4052 MVFSFQALLVFGDLLLNCMVEKVLDFVQLEQLQSSHSQTLLRIQQLLNFPAALSNWNNDTDFCNTDSNSSLSVVCYEDTITQLHIIGERRDSPLPRNFSINSFVTTLVRLPSLKVLTLVSLGIWGPLPGKIARLSSLEILNMSSNFLYGSIPQELSSLKSLQTLIFDNNMLAETFPPWLDSLPALTVLSLKNNLFNGSLPNSLGNVENLRALSLSHNHLYGVLPDFSRLKNLQVLELDDNAFGPQFPQLGNKLVTLVLRNNRFRDGIPAELSSYYQLKRLDISSNAFVGPFPPGLLSLPSITYLNISGNKLTGMLFENLSCNSELDVVDLSSNLLTGSLPKCLVSNSSDSTFLYARNCLDSANQNQQPQPFCHTEALAVGILPERKKHRQVSKVVLSLGIVGGTLGGVALVLLIFFIVRRGNARIKTKNPPTRLISENAASGYTSKLLSDARYISQTKKLGAVGLPSYRSFSLEEIEAATNYFDTASLMGEDSYGKMYRGQLKNGSVVAIRCVEMTKKYSTQNFVNHIELISKLRHRHLVSAIGHCFECSLDDSSVNKVFLVFEYVPNGTLRDWICDENVRKCLSWSQRIGAAIGVTKGIQFLHTGIVPGVYSNDLKIEDVLMDQNLVAKISSYHLPLLSNMGKVRHGNSSSGLKHSSNNKSVKHEDKSDIYDLGVILLELILGRQIKTENDADAFRDLLQASLGADEEGRRNVVDTAIRKACLDQSLKTMMEICVRCMVKEPEDRPSIEDVLWNLQFASQVQDAWRVDSQSSEGSPGSESRGLPFQ 787
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu6g03384 787 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN DDB_G0281931-RELATED 399 769 - -
Vimu6g03384 787 Gene3D Phosphorylase Kinase; domain 1 454 565 - -
Vimu6g03384 787 MobiDBLite consensus disorder prediction 767 787 - -
Vimu6g03384 787 FunFam Putative inactive leucine-rich repeat receptor-like protein kinase isoform A 251 368 - -
Vimu6g03384 787 FunFam Putative inactive leucine-rich repeat receptor-like protein kinase 566 772 - -
Vimu6g03384 787 Gene3D Ribonuclease Inhibitor 250 367 IPR032675 -
Vimu6g03384 787 Gene3D Transferase(Phosphotransferase) domain 1 566 774 - -
Vimu6g03384 787 Pfam Leucine rich repeat 160 219 IPR001611 GO:0005515
Vimu6g03384 787 Gene3D Ribonuclease Inhibitor 33 249 IPR032675 -
Vimu6g03384 787 ProSiteProfiles Protein kinase domain profile. 483 758 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu6g03384 787 SMART LRR_typ_2 182 205 IPR003591 -
Vimu6g03384 787 SMART LRR_typ_2 206 229 IPR003591 -
Vimu6g03384 787 SMART LRR_typ_2 298 318 IPR003591 -
Vimu6g03384 787 SMART LRR_typ_2 134 158 IPR003591 -
Vimu6g03384 787 Pfam Protein tyrosine and serine/threonine kinase 487 753 IPR001245 GO:0004672|GO:0006468
Vimu6g03384 787 FunFam Putative inactive leucine-rich repeat receptor-like protein kinase 456 565 - -
Vimu6g03384 787 ProSiteProfiles Leucine-rich repeat profile. 208 230 IPR001611 GO:0005515
Vimu6g03384 787 SUPERFAMILY Protein kinase-like (PK-like) 465 760 IPR011009 -
Vimu6g03384 787 SUPERFAMILY L domain-like 53 359 - -
Vimu6g03384 787 FunFam Putative inactive leucine-rich repeat receptor-like protein kinase 33 250 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu6g03384 Vimu-Chr6 30451978 30456702 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu6g03384 49 785 Miscellaneous Gene Families AT3G03770 60.916 0.0 876
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-VI-1 Vimu6g03384 PK_Tyr_Ser-Thr 2.1e-21 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu6g03384 - - gmx:100807539 1328.54