Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu6g03383 ATGGCTAATGAGGCAGAAGGCAATGTTGAAAAGCAGAAAAGCAAGGTCTCAAAGTGTGTTCGATCACGAGCATCATCTCCTCCATGCGCAGCATGCAAGAAAATGAGAAAAAAATGCAGCAGTGACTGCATCTTTGCACCTTATTTTGGTTCTAGCCAGGGCTCAACGCTGTTTGCAGCAGTGCACAAGGTGTTTGGTGCAAACAATTTGTCAAAACTATTACTAGAAGTTGAAGAGATTCATCGTAATGAGGCCATAAATTCCTTGTGCTACGAAGCTCAAACAAGGCTAGCCAACCCTGTTCATGGTTGTCTCTCCACCATTTCTGCTTTGCAACGACAGGTGGCAGCGTTGCAAGGAGAGCTTGCTATGGTTCAAAATCAATTGATTAATACACAAAATTTATATGAAAGTCTTCTTGAGAGGACATATCAGCAACAACAACCAAACATCAATGTAGTTGTGCAACCTTCTGCAAATAATGTGATGAACATGAGCTACTTCAACCCAGCTTTTGATCACCTTTCAATGCAGACAACACCTTCAACAGACAACATCCACCCTCCTCAGTATTTCTTTCCATAA 585 0.4188 MANEAEGNVEKQKSKVSKCVRSRASSPPCAACKKMRKKCSSDCIFAPYFGSSQGSTLFAAVHKVFGANNLSKLLLEVEEIHRNEAINSLCYEAQTRLANPVHGCLSTISALQRQVAALQGELAMVQNQLINTQNLYESLLERTYQQQQPNINVVVQPSANNVMNMSYFNPAFDHLSMQTTPSTDNIHPPQYFFP 194
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu6g03383 194 Pfam Lateral organ boundaries (LOB) domain 28 126 IPR004883 -
Vimu6g03383 194 Coils Coil 108 142 - -
Vimu6g03383 194 PANTHER LOB DOMAIN CONTAINING PROTEIN 26 166 - -
Vimu6g03383 194 ProSiteProfiles LOB domain profile. 27 129 IPR004883 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu6g03383 Vimu-Chr6 30444179 30446400 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu6g03383 28 133 AS2 family AT3G03760 61.321 1.39e-43 144
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Vimu6g03383 LOB 1e-34 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu6g03383 - - vra:106753728 369.392