Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu6g03378 TTGAAGGTTGAGAAGGAGAAGAGAGTGAGAGATAGGAAGATGACGGGAGAGCATAGGAGAAGTGTGACTTCTTGGAGCAGTTCTGAATCGGTGACAGAGATAGTGTTGGGGTCTCACATGTTTGAAATAAAAGGATACTCTTTGACAAAGGGAATGGGCATTGGAAAATGCATTGACAGCAAGAAGTTCACCATTGGAGGCTACGAATGGGGCATACAGTTCTACCCAGATGGCAAATACACCAAAGATAACTCCTCTTATGTTTCTCTCTTCATCACACTCTATTCCAACGCCACTGATGTTCCCGTCTTTTATCAGATCATCTTGCTCGATCAGACACCAAAACGGAAACGCCATGCTGGTACCCATTACGATCACTCCTTCGAATGTGGACCCTGCGTTTTCAAAACCCGTGGCAGCATGTGGGGTTATAACCGGTTCTGCAATCGGAAAGATCTTGAGGCTTCAGGTTTTCTGAAGGATGACTGCTTGAAGATTGAGTGCACTATTGGTGTTGTGGTGACATCGTGCAGTGATTCTTCCAAGTTAAAGAAAATAAAAGTTCCTGAGTCTGATATGAGTGAACAGTTCGGGAGGCTGTTAGATTCTGGGGCATTTTCTGATATTACTTTCTCAGTTAGAGGACAAAAGTTTCCTGCTCATAAGCTTGTATTGGCTGCTCGCTCAAAACTGTTTCTAACTGAGTTTGTTAATGGGAGGGAGAAGGATGAAGATGGTCACATACTTATTAATGACATTGAACCTAGGGTTTTCAAGGCTTTGCTTCATTTTATTTATAGAGACTGTCTAATACATGATAAAGAGCTTTATAAGTCACGTTGGTCACCGTATTCTTCGGTATTTGAAACATTTCCGGCAAAGTTGTTAGCAGCTGCAGAAAAGTTTGATTTATCAAGACTTAAGCTGATGTGTGAGTCTGTACTGTGCAATGATATATCTACAGATTCTGTTGTCAACATTTTACTTCTTGCTGATCGTAATCATGCAACTGAATTGAAGTACGCGTGTCTAAAATTTGCTGTTCAAAACCTTCATGCTGTCATGCAATCTGACTGTTTCAAATATCTTACTCAAAAGAATCCACTGTTGCAAGTTGAACTGCTCCAAACTTGGGTAGAATTCAAGGAATCATTAATTGGAAAACCAAAATATGAATCTTTGAAGACCCAGTCTCCAGATGATGATCATTAA 1212 0.4059 MKVEKEKRVRDRKMTGEHRRSVTSWSSSESVTEIVLGSHMFEIKGYSLTKGMGIGKCIDSKKFTIGGYEWGIQFYPDGKYTKDNSSYVSLFITLYSNATDVPVFYQIILLDQTPKRKRHAGTHYDHSFECGPCVFKTRGSMWGYNRFCNRKDLEASGFLKDDCLKIECTIGVVVTSCSDSSKLKKIKVPESDMSEQFGRLLDSGAFSDITFSVRGQKFPAHKLVLAARSKLFLTEFVNGREKDEDGHILINDIEPRVFKALLHFIYRDCLIHDKELYKSRWSPYSSVFETFPAKLLAAAEKFDLSRLKLMCESVLCNDISTDSVVNILLLADRNHATELKYACLKFAVQNLHAVMQSDCFKYLTQKNPLLQVELLQTWVEFKESLIGKPKYESLKTQSPDDDH 403
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu6g03378 403 ProSiteProfiles MATH/TRAF domain profile. 36 170 IPR002083 GO:0005515
Vimu6g03378 403 Gene3D - 317 396 - -
Vimu6g03378 403 MobiDBLite consensus disorder prediction 1 22 - -
Vimu6g03378 403 CDD MATH 37 170 IPR002083 GO:0005515
Vimu6g03378 403 Gene3D Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A 36 174 IPR008974 GO:0005515
Vimu6g03378 403 MobiDBLite consensus disorder prediction 1 19 - -
Vimu6g03378 403 CDD BTB_POZ_BPM_plant 193 316 - -
Vimu6g03378 403 ProSiteProfiles BTB domain profile. 207 274 IPR000210 GO:0005515
Vimu6g03378 403 Pfam BTB/POZ domain 198 317 IPR000210 GO:0005515
Vimu6g03378 403 PANTHER BTB/POZ AND MATH DOMAIN-CONTAINING PROTEIN 1 27 370 IPR045005 GO:0016567
Vimu6g03378 403 SMART BTB_4 207 319 IPR000210 GO:0005515
Vimu6g03378 403 SUPERFAMILY TRAF domain-like 37 174 - -
Vimu6g03378 403 Gene3D Potassium Channel Kv1.1; Chain A 183 313 IPR011333 -
Vimu6g03378 403 SUPERFAMILY POZ domain 186 317 IPR011333 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu6g03378 Vimu-Chr6 30384312 30386652 Dispersed/Proximal
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR TRAF Vimu6g03378 BTB 5.7e-23 CL0033
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu6g03378 K10523 - gmx:100809683 423.32