Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu6g03375 ATGACGTTGTACAACCCAATGACAGAGAGCAGCAGCAAGGGTCTGCCATCTCTGACGAATTCCTTGTCTGTAACGGAGACAGTGAATGGAACACACAATTTTGAGTTGAAGGGTTACTCTCTAACGAAGGGAATGGGCGTTGGAAAATTCATCGAAAGCGAGGCATTCACAGTAGGAGGGCACCAGTGGGCCATATACTTCTACCCAGATGGCAAGGTCCCCAGTGATAATGGTGTTTATGTTTCCATCTTTGTCGCCCTCGTTTCCGAGAGCATCGATGTTCGTGCGCTGTTCGAACTCAAGTTGCACGACCAAAGCGGCAAAGGGAATCATTTGGTTTATAGCCACTTCGATCGGAGCCTCGAGAATGGCCCTTACACTATCAAAAACCGTGGCTGCATTTGGGGATATAAGCGGTTTTTCAAACGAAAAGACCTTGAGACATCAACTTTCATCAAGGAAGACTGCTTGAAGATCAGTTGCACTGTCGGTGTTCTGGTGATGTCTGATTCTTCTATGTTAAACGCAATTCATATTCCTGAATCTGATATAGGAACAGATCTGGGGGTGCTGTTAGATCATGAAGACTTATGTGATGTCACTTTCTCCATTAACGGGGAAAGGTTTCGTGCACACAAGCTTATTTTGGGTGCTCGATCAACAGTGTTTGAAAACTGGTTTTCTGATGGGTTGGGGAAGGATAATAGCGAGATAGTTCTCAATGACATGGAGCCTAAAGTTTTCAAGGCTTTGCTTCACTTTATATACAAAGACACTCTGGTGGAAGATCAAGAGCTGTTTTCGTGGCAATCATCATCGTATTCTTCGATACCAGAATCGTTTCCTGCAAAGTTATTAGCTGCATCGAACAAGTTTGCCTTGCCAAGATTGAAGCTCATGTGTGAATCAATATTTTGTAGAGGCATATCTATATATTCTGTGCCATATATCCTGGTTCTTGCAGATCGTTATCATGCTACTGAGTTGAAGCCCATCTGTCAAAACTTTTGTGCAGAAAACTATGATGCTGTGGTGAAATCTGGTGGTTTGGAGTATATTAGGCAAAAATGTCCGTTTTTGCGAGCAGAACTGCAAACTATTGCTGCTGGTTTGGACAAATTCATTGTGCACTATGCTAGGAAAGAACCAAATTCAGAAAGAGGTGAAGGTTCAAGCAGTCACATTTCTGATGCTGTTAACGAGAACAATGATCCATTAGGCATTAGTTTTAAGATTTGTAATGGTAAAGGAAATTAG 1257 0.4248 MTLYNPMTESSSKGLPSLTNSLSVTETVNGTHNFELKGYSLTKGMGVGKFIESEAFTVGGHQWAIYFYPDGKVPSDNGVYVSIFVALVSESIDVRALFELKLHDQSGKGNHLVYSHFDRSLENGPYTIKNRGCIWGYKRFFKRKDLETSTFIKEDCLKISCTVGVLVMSDSSMLNAIHIPESDIGTDLGVLLDHEDLCDVTFSINGERFRAHKLILGARSTVFENWFSDGLGKDNSEIVLNDMEPKVFKALLHFIYKDTLVEDQELFSWQSSSYSSIPESFPAKLLAASNKFALPRLKLMCESIFCRGISIYSVPYILVLADRYHATELKPICQNFCAENYDAVVKSGGLEYIRQKCPFLRAELQTIAAGLDKFIVHYARKEPNSERGEGSSSHISDAVNENNDPLGISFKICNGKGN 418
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu6g03375 418 Gene3D - 309 382 - -
Vimu6g03375 418 ProSiteProfiles BTB domain profile. 198 264 IPR000210 GO:0005515
Vimu6g03375 418 SMART math_3 34 146 IPR002083 GO:0005515
Vimu6g03375 418 SUPERFAMILY TRAF domain-like 26 165 - -
Vimu6g03375 418 Gene3D Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A 28 166 IPR008974 GO:0005515
Vimu6g03375 418 ProSiteProfiles MATH/TRAF domain profile. 29 163 IPR002083 GO:0005515
Vimu6g03375 418 SUPERFAMILY POZ domain 179 307 IPR011333 -
Vimu6g03375 418 CDD MATH 30 163 IPR002083 GO:0005515
Vimu6g03375 418 SMART BTB_4 198 309 IPR000210 GO:0005515
Vimu6g03375 418 CDD BTB_POZ_BPM_plant 184 306 - -
Vimu6g03375 418 Gene3D Potassium Channel Kv1.1; Chain A 174 306 IPR011333 -
Vimu6g03375 418 Pfam BTB/POZ domain 191 307 IPR000210 GO:0005515
Vimu6g03375 418 PANTHER BTB/POZ AND MATH DOMAIN-CONTAINING PROTEIN 1 23 364 IPR045005 GO:0016567
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu6g03375 Vimu-Chr6 30361847 30363660 Dispersed/Proximal
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR TRAF Vimu6g03375 BTB 6.6e-24 CL0033
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu6g03375 K10523 - gmx:100809683 478.404