Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu6g03373 ATGTCCAATGTAGCCAGCGAAGTTATAAACCCGATGACCCCATACTACCACGGACTATACGACCAAAGCCTGCATTCCATTGGGAGACTCCAACATGCTGCCATGAATATTGTGGGCTTTCCGATTACTAGCTGTTATATCCATTTTTGTGATGTGCGTTATGGAGTGATCAATGATGCACTGATTGTGTCTATTAGGGGTTATAAGAGATTTTTTAAACGGGCTCAACTCGAGGCTTCAACATTCCTGAAGGACGACTGCTTGAAGATAAACTGCACTGTCGGTGTGGTGGTCTCATCCATTGATTGCTCTAAATTAAACACAATACATGTTCCTGAGTCTGACATTGGGTCACATTTCGGAATGCTGTTAGAGAATGAGGAGGGATCAGATGTTACTTTCTCTGTAGGTGGAGAAAGGTTTCATGCTCATAAACTTGTATTAGCTGCTCGGTCAACTGCATTCGAAACTGAATTTTTCAATGGGATGGAGGAGGATGAGCAGGATATAGTTGTTACTGACATGGAACCTAAGGTTTTCAAGGCTTTACTTCATTTTATTTATAGAGACACTCTTATAGATGATGAAGAGCTTTTTGTGTCACGTTCATCATTCTTGCCTTCAGTATCTGAATCATTTGCAGCAAAGTTGTTAGCTGCTGCGGAAAAGTATGGCTTGCCTAGACTTAAGCTGATGTGTGAATCTGTACTTTGTAAAGACATTTCTATAGATTCTGTAGCCTATATTCTGGCTCTTGCTGATCGCTATTGTGCTACAGAGTTGAAGTCTGTCTGTCTACAGTTTTCTGCTGAAAACCTTGTTGCTGTGATGCAATCTGATGGTTTTGAATATCTTAAGGAAAATTGTCCATTACTGCAATCGGAACTGCTAAAGACTGTGGCGGGATGCGAGGAGGAATTTAGTGGAGAAGGAAAATGTCGAAGTGTGTGGGCCCAGTTTTCTGATGGTGGTGACACCAATGACAGGAGTGTAAGACAACAAACCTGGGAGAATGGAGTTGACAGGAGTCAAAGCTTATGGGTTCATCTTTCTGATGGTGTTAACAACAATGACAGGAGTCCAGGGCAAGAACCGTGA 1098 0.4208 MSNVASEVINPMTPYYHGLYDQSLHSIGRLQHAAMNIVGFPITSCYIHFCDVRYGVINDALIVSIRGYKRFFKRAQLEASTFLKDDCLKINCTVGVVVSSIDCSKLNTIHVPESDIGSHFGMLLENEEGSDVTFSVGGERFHAHKLVLAARSTAFETEFFNGMEEDEQDIVVTDMEPKVFKALLHFIYRDTLIDDEELFVSRSSFLPSVSESFAAKLLAAAEKYGLPRLKLMCESVLCKDISIDSVAYILALADRYCATELKSVCLQFSAENLVAVMQSDGFEYLKENCPLLQSELLKTVAGCEEEFSGEGKCRSVWAQFSDGGDTNDRSVRQQTWENGVDRSQSLWVHLSDGVNNNDRSPGQEP 365
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu6g03373 365 CDD MATH 66 94 IPR002083 GO:0005515
Vimu6g03373 365 Gene3D Potassium Channel Kv1.1; Chain A 106 235 IPR011333 -
Vimu6g03373 365 FunFam BTB-POZ and math domain 1 106 235 - -
Vimu6g03373 365 SUPERFAMILY TRAF domain-like 66 96 - -
Vimu6g03373 365 CDD BACK_AtBPM-like 238 299 IPR034090 -
Vimu6g03373 365 PANTHER BTB/POZ AND MATH DOMAIN-CONTAINING PROTEIN 1 55 297 IPR045005 GO:0016567
Vimu6g03373 365 ProSiteProfiles BTB domain profile. 130 196 IPR000210 GO:0005515
Vimu6g03373 365 SMART BTB_4 130 241 IPR000210 GO:0005515
Vimu6g03373 365 SUPERFAMILY POZ domain 109 239 IPR011333 -
Vimu6g03373 365 Pfam BTB/POZ domain 122 239 IPR000210 GO:0005515
Vimu6g03373 365 CDD BTB_POZ_BPM_plant 116 238 - -
Vimu6g03373 365 Gene3D - 240 314 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu6g03373 Vimu-Chr6 30346357 30349150 Dispersed/Proximal
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR TRAF Vimu6g03373 BTB 5.9e-27 CL0033
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu6g03373 K10523 - gmx:100809683 585.104