Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu6g03370 ATGGCTGAAGAGAATCCAAAGCCTCTGAATTACATCCCCGAGGTTATACTCAAGAAGCGCAAAAGCAGGGAAGCATGGGCATTGAGAAAGAAAGAGCAATTCCAGCACAAGAATTTTCAATCCATCAAGAAGCCCGAGGATTTCATCCACGAGTATCGCAACCAGGAAGTGGATCTCATTAGGATGAAGCGAAGGGTGAAGAGGAAACTTCCCCAAGTTCACTCCAACATATTGATAATCATTCGTATACAGGGGAAAAAAGACATGCATCCCAAAACAAGGAAGGTGCTGTACAGCTTGGGTTTGAGGAGTATGTTCAGTGCTGTTCTTGTGAAGCCAAGTGATGGAATAATGGCCAAGCTGCAGAGGGTGGAACCATATGTGACCTATGGATATCCAAACCTTAAAAGTATAAAAGAGCTAATTTACAAGAAAGGACTCGCCAGGATGGATGGGCGGAAAGTTCCCTTGACAGATAATAACGTTATTGAACAGGAATTAGGAAAGTTTGGTATTGTCTGCATAGAGGACATGGTGCATCAGCTATATAATGCTGGTCCCCACTTTAAGGAAGTTGTCAGATTTATGTGGCCCTTTGTACTCAACAAGCCAGCTGAAGGATTGAAAGGATCAAAAACCCTATTCAAGGAGGGTGGAGACACAGGGAACCGTGATGATCTCATCAACGAACTCATCGATAAAATGAATTAG 711 0.4318 MAEENPKPLNYIPEVILKKRKSREAWALRKKEQFQHKNFQSIKKPEDFIHEYRNQEVDLIRMKRRVKRKLPQVHSNILIIIRIQGKKDMHPKTRKVLYSLGLRSMFSAVLVKPSDGIMAKLQRVEPYVTYGYPNLKSIKELIYKKGLARMDGRKVPLTDNNVIEQELGKFGIVCIEDMVHQLYNAGPHFKEVVRFMWPFVLNKPAEGLKGSKTLFKEGGDTGNRDDLINELIDKMN 236
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu6g03370 236 Pfam Ribosomal protein L30p/L7e 78 128 IPR016082 -
Vimu6g03370 236 FunFam 60S ribosomal protein L7 77 181 - -
Vimu6g03370 236 PANTHER 60S RIBOSOMAL PROTEIN L7 9 236 IPR039699 -
Vimu6g03370 236 SUPERFAMILY Ribosomal protein L30p/L7e 78 236 IPR036919 -
Vimu6g03370 236 CDD Ribosomal_L7_archeal_euk 77 236 IPR035808 -
Vimu6g03370 236 FunFam 60S ribosomal protein L7-1 isoform A 182 236 - -
Vimu6g03370 236 Gene3D - 77 182 IPR036919 -
Vimu6g03370 236 Gene3D - 183 236 IPR036919 -
Vimu6g03370 236 NCBIfam 60S ribosomal protein uL30 16 236 IPR005998 GO:0000463|GO:0003735|GO:0022625
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu6g03370 Vimu-Chr6 30310971 30314320 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu6g03370 1 236 Cytoplasmic Ribosomal Protein Gene Family AT1G80750 54.656 7.13e-91 266
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu6g03370 K02937 - gmx:100500005 424.476