Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu6g03354 ATGGTGTACTGCAGTCACTGCGCCAAAAATGTAGCTGGGGAGAGAATGGATGACGGTTTCTTATGTTGTGTAATCTGTGGGAAGGTGTTGGAAGATTACTTTTTTACTGAGGAGCCTACATTTGTCAAGAATGCGGCAGGGCAGAGTAAATTATCAGGTAATTATGTAAGAACAGTTCAAAGCGAGTTCTCCGAGTCACGTCAAAGGACTTTAGATAAAGCTCATGAAGAGATTAAATATCTAAGTTCTGGCCTTGGAGTTCAGGATGAACATATGGCTGACCAAGCACTTGCCTTTTACAAAATGGCGCTTGAGCGAAACTTCACTCGTGGACGTAAATCAGAGCAAGTACAGGCTGCTTGTCTCTATATTGCATTTCGGCACAACAACAAGCCGTACCTTCTTATTGATTTTTCAAATTATTTAAGAATAGATGTTTATGCTCTAGGATCAGTTTTCTTGCAGCTTTGTGAAGTGTTGAAGCTTGGAGAGCACCCAATTGTTCAAAAGCCTATTGATCCTAGTCTTTTTATTCATAGATATACTAAAAATTTGATTAAGCGAGGGAGTAAGGCAGTCTCTGATACTGCTCTGACCATTGTTGCAAGTATGAAACGAGACTGGATGCAGACAGGGAGGAAACCTAGTGGTCTATGTGGTGCGGCATTATACATTTCTGCTTTTGCACATGGAATTAAATGCTCTAAACCCGATATTCTTAGAATCGTCCATGTATGTGAAGCAACATTGACCAAACGATTGGTTGAATTTGAGAATACGAAATGTTCTAGCTTGACAGTTGAGGAGTTGGATACATTGGCAAAGGAGCAAGAAAATAATCCAACAGTAATGCCAGAAGGTGAATTGAAAGGGGTTACTTCGAAAGATCTTCTATGTGAGCACAAGGACAGCGGGGCTTCCCATTTTGCACTTGGATTGTGTGAAGAATGCTATAAGGACTTAGATAAGCTCTCTGGTGGACTTGGTGGTGGTTCGGATCCTCCTGCATTCCAGCGTGCTGAGAGGGAAAGAGAGAAAAGGGCACTTCTCAAAGAGAGTGTTGATGAAGCACGTGATTTGGCGAATGCATCAAATGATCAGTTTAAGAGCCATAGAGAGGATTTGCCAGTGCCAGAAGGGGCTAATGTTGCGCATGAGTCCAATAAAGATGGTGAATATGATGATTCATTTAGAGAAGATAAATCAGAAACTTTATCTGATATTGATGATGAAGACGTTGATTTATACATTCATGATGAGGAGGGGAGGCAGATTAAGAAGATGCTGTGGGAAGCAGCAAATAGGGAGTATCTTGAGGAGCAGGCAGCCAAGGAAGCAATTGCAGCAGCTAATAAGAAAGCTTTTGAGGCAAATTTTGAAAACTGTTCAGAGGATTTACTTGCAGCAAGAGAGCTCGCTGCATCTGCTTCTGAAGCTGTGGCAAAATCCAGAAAGGAAATGAAACAGAGACGAGCCAATGAGGCAAAAAATATGGGGCCAGCTCAATCTGCTGCAGAGGCCTTCGGCCAAATGTCTAATAAAAAGAGGCAATTGCAGAGTCTGAAATCTAAAGTCAATTTTGATCGCCTGGGTGAACTATTTAATGAACTGGAAAAAACGGATTATCCCAAGAAAGAAAAGAAAGCACGATTTGATCCGCCCCTAGATAATAATGACAACTTACAGTCATTTGAGCACAAAAATGATGATGAGATGGGATCAGTGGAGGAATTTGAAGATGATATGGGGGAGATGTATCAAAGTCGGTTGTCTACTGATAATATTGCAGATACATATTTCCCTGAGGATGATGAATACGGCTATAACGATAATGATTATTAA 1842 0.4104 MVYCSHCAKNVAGERMDDGFLCCVICGKVLEDYFFTEEPTFVKNAAGQSKLSGNYVRTVQSEFSESRQRTLDKAHEEIKYLSSGLGVQDEHMADQALAFYKMALERNFTRGRKSEQVQAACLYIAFRHNNKPYLLIDFSNYLRIDVYALGSVFLQLCEVLKLGEHPIVQKPIDPSLFIHRYTKNLIKRGSKAVSDTALTIVASMKRDWMQTGRKPSGLCGAALYISAFAHGIKCSKPDILRIVHVCEATLTKRLVEFENTKCSSLTVEELDTLAKEQENNPTVMPEGELKGVTSKDLLCEHKDSGASHFALGLCEECYKDLDKLSGGLGGGSDPPAFQRAEREREKRALLKESVDEARDLANASNDQFKSHREDLPVPEGANVAHESNKDGEYDDSFREDKSETLSDIDDEDVDLYIHDEEGRQIKKMLWEAANREYLEEQAAKEAIAAANKKAFEANFENCSEDLLAARELAASASEAVAKSRKEMKQRRANEAKNMGPAQSAAEAFGQMSNKKRQLQSLKSKVNFDRLGELFNELEKTDYPKKEKKARFDPPLDNNDNLQSFEHKNDDEMGSVEEFEDDMGEMYQSRLSTDNIADTYFPEDDEYGYNDNDY 613
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu6g03354 613 MobiDBLite consensus disorder prediction 598 613 - -
Vimu6g03354 613 FunFam Transcription factor IIIB subunit 173 262 - -
Vimu6g03354 613 SUPERFAMILY Cyclin-like 172 268 IPR036915 -
Vimu6g03354 613 MobiDBLite consensus disorder prediction 361 403 - -
Vimu6g03354 613 CDD CYCLIN_TFIIIB90_rpt2 170 260 - -
Vimu6g03354 613 Gene3D Single helix bin 399 447 - -
Vimu6g03354 613 SUPERFAMILY Cyclin-like 74 162 IPR036915 -
Vimu6g03354 613 MobiDBLite consensus disorder prediction 593 613 - -
Vimu6g03354 613 SMART cyclin_7 176 259 IPR013763 -
Vimu6g03354 613 SMART cyclin_7 69 158 IPR013763 -
Vimu6g03354 613 PRINTS Transcription initiation factor IIB signature 119 138 IPR000812 GO:0006352|GO:0070897
Vimu6g03354 613 PRINTS Transcription initiation factor IIB signature 213 229 IPR000812 GO:0006352|GO:0070897
Vimu6g03354 613 PRINTS Transcription initiation factor IIB signature 16 36 IPR000812 GO:0006352|GO:0070897
Vimu6g03354 613 PANTHER TRANSCRIPTION INITIATION FACTOR IIB-RELATED 2 521 IPR000812 GO:0006352|GO:0070897
Vimu6g03354 613 FunFam Transcription factor IIIB 90 kDa subunit 63 166 - -
Vimu6g03354 613 Gene3D - 63 164 - -
Vimu6g03354 613 Pfam Brf1-like TBP-binding domain 406 535 IPR011665 -
Vimu6g03354 613 MobiDBLite consensus disorder prediction 365 403 - -
Vimu6g03354 613 Coils Coil 340 360 - -
Vimu6g03354 613 Gene3D - 173 264 - -
Vimu6g03354 613 Pfam Transcription factor TFIIB repeat 68 157 IPR013150 GO:0017025
Vimu6g03354 613 Pfam Transcription factor TFIIB repeat 169 259 IPR013150 GO:0017025
Vimu6g03354 613 CDD CYCLIN_TFIIIB90_rpt1 70 160 - -
Vimu6g03354 613 MobiDBLite consensus disorder prediction 542 576 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu6g03354 Vimu-Chr6 30160150 30176092 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu6g03354 1 521 Inorganic Solute Cotransporters AT2G01280 41.808 1.64e-113 346
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu6g03354 K15196 - gmx:100817609 927.161