Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Vimu6g03351 | ATGGTGTACTGCAGTCACTGTGCCAAAAATCTAGCTGTGGAGAGAATGGATGACAGTGAATTATATTGTGTAATCTGTGGGAAGGTGTTGGAAGATTACTTTTTTACTGAGGAGCCTACATTTGTCAAAAATGCGGCAGGGCAGAGTAAATTATCAGGTAATTTGGTAAGAACAGTTCAGAGCGAGCTCTCCGAGTCACGTCAAAGGACTTTAGATAGAGCTCATGAAGAGATTAAATATCTAAGTTCTGGCCTTGGAGTTCAGGATGAACATATGGCTGACCGAGCACTTGACTTTTATAAAGTGGCGCTTGAGCGAGACTTCACTCGTGGACGTAAATCAGAGCAAGTACAGGCTGCTTGTCTCTATATTGCATTTCGGCTCAACAACAAGCCGTACCTTCTTATTGATTTTTCAAATTATTTAAGAATAGATGTTTATGCTCTAGGATCAGTTTTCTTGCAGCTTTGTGAAGTGCTGAGGATTGGAAAGCTCCCAATAGTTCAAAAGCCTATTGATCCTAGTCTTTTCATTCATAGATATACTAAAAATTTGATTAAGCGAGGGAGTAAGGCGGTCTCTGATACTGCTCTGAGCCTTGTTGCAAGTATGAAACGAGACTGGATGCAGACAGGGAGGAAACCCAGTGGTCTATGTGGTGCGGCATTATACATTTCTGCTTTTGCTCATGGAATTAAATGCTCTAAACCCGATATTGTAGGTGTGGTGAAGATTAAGTTAAATGGGTCTGTATGGGAATTGAAAAATGTTACACATATTCCTGACCTAACAAAGAACTTAATCTCAGTAGGCCAATTGGCCAATGATGGCTACACAACAGTCTTCCATGGTGATAATTGGAAGATTTCAAAGGGTGCAATGACAATTGCTTGTGGTAGGAAGAGTGGTACTCTCTACAAGACAAAAGGAGCTTGTCATTTGATTGCAGTTGCAATGAATGAAAATCCTAACCTATGGCATCAAAGGTTAGAAACTCCTATAATTGAGACTCCTCAGTCAGAGGAATCATGTGAAAATAATGATAATGAAGAACTTGACACACCAGAACTTTCTATTCCAGCTCCTGTTGAGGAGTTGGATACATTGGCAAAGGAGCAAGAAAACAATCCAACAGTAATGCCAGAAGGTGAATTGAAAGGGGTTACTTCGAAAGATCTACTATGTGAGCACAAGGACAGTGGGGCTTCCCATTTTGCACTTGGATTGTGTGAAGAATGCTATAAGGACTTAGATAAGCTCTCTGGTGGACTTGGTGGTGGTTCGGATCCTCCTGCATTCCAGCGTGCTGAGAGGGAAAGAGAGAAAAGGGCACTTCTCAAAGAGAGTGTTGATGAAGCATGTGATTTGGCGAATGCATCAAATGATCAGTTTAAGAGCCATAGAGAAGATTTGCCTGTGCCAGAAGGGGCTAATGTTGCGCATGAGTCCAATAAAGATGGTGAATATGATGATTCATTTAGAGAAGATGAATCAGAAACTTTATCTGATATTCGTGATGAAGACGTTGATTTATACATTCATGATGAGGAGGGGAGGCAGATTAAGAAGATGCTGTGGGAAGCAGCAAATAGCGAGTATCTTGAGGAGGAGGCAGCCAAGAAAGCAATTGCAGAAGCTGACAAGAAAGCTTTTGAGGCAAATTTTGAAAACTGTTCAGAGGATTTACTTGCAGCAAGAGAGCTCGCTGCATCTGCTTCTGAAGCTGTGGCAAAATCCAGAAAGGAAATGAAACAGAGACGAGCCAATGAGGCAAAAAATATGGGGCCAGCTCAATCTGCTGCAGAGGCCTTCGGCCGAATGTCTAATAAAAAAAGGCAATTGCAGAGTCTGAAATCCAAAGTCAATTTTGATCGCCTGAGTGAACTATTTAATGAACTGGTACTTCTCTCTAGAACTTGTTTGCTTCATATCACATGGGCTAATGTTGAGAATGAGGCCGCCGAAGATAGTGAATTTGATGATTCACTTAGAGAAGATGAATCAGAAACTTTGTCTGATATTGATGATTGTGATGTTGATGTGTATCTTCACAGTGAGGAGGGGAAGAATATCAAGAAGATGCTGTGGGAAAGAGTTAACCGAGTGTATGTTATGGAACAGGCAGCCAAGAAAGCAGTTGCAACAGCTAATAAGAAAGCTTTTGAGGGAAATTTTGCAAACTGCTCGGAGGATTTCCTAGCAGCAAGAGGGCTAGCTGCAGCTGCGGCAAAATCCAGAAAGGGAATGAAGCAGAGACGAGCCCATGAAGCAAAAAACATTGCGCCAACTCAATCTGCTGCAGAGGCCTTCGGCCAAATATCTAATGAAAAAAAGAGTCTCAATTCTAAAGTCAATATAGATCGCCTGGAGGAATTATTCAATGATATGGAGGAGGATGAGATGGGATCAGCGGATGATTACTGA | 2424 | 0.4167 | MVYCSHCAKNLAVERMDDSELYCVICGKVLEDYFFTEEPTFVKNAAGQSKLSGNLVRTVQSELSESRQRTLDRAHEEIKYLSSGLGVQDEHMADRALDFYKVALERDFTRGRKSEQVQAACLYIAFRLNNKPYLLIDFSNYLRIDVYALGSVFLQLCEVLRIGKLPIVQKPIDPSLFIHRYTKNLIKRGSKAVSDTALSLVASMKRDWMQTGRKPSGLCGAALYISAFAHGIKCSKPDIVGVVKIKLNGSVWELKNVTHIPDLTKNLISVGQLANDGYTTVFHGDNWKISKGAMTIACGRKSGTLYKTKGACHLIAVAMNENPNLWHQRLETPIIETPQSEESCENNDNEELDTPELSIPAPVEELDTLAKEQENNPTVMPEGELKGVTSKDLLCEHKDSGASHFALGLCEECYKDLDKLSGGLGGGSDPPAFQRAEREREKRALLKESVDEACDLANASNDQFKSHREDLPVPEGANVAHESNKDGEYDDSFREDESETLSDIRDEDVDLYIHDEEGRQIKKMLWEAANSEYLEEEAAKKAIAEADKKAFEANFENCSEDLLAARELAASASEAVAKSRKEMKQRRANEAKNMGPAQSAAEAFGRMSNKKRQLQSLKSKVNFDRLSELFNELVLLSRTCLLHITWANVENEAAEDSEFDDSLREDESETLSDIDDCDVDVYLHSEEGKNIKKMLWERVNRVYVMEQAAKKAVATANKKAFEGNFANCSEDFLAARGLAAAAAKSRKGMKQRRAHEAKNIAPTQSAAEAFGQISNEKKSLNSKVNIDRLEELFNDMEEDEMGSADDY | 807 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Vimu6g03351 | 807 | SUPERFAMILY | Cyclin-like | 172 | 245 | IPR036915 | - | |
| Vimu6g03351 | 807 | FunFam | Transcription factor IIIB 90 kDa subunit | 63 | 166 | - | - | |
| Vimu6g03351 | 807 | Pfam | Transcription factor TFIIB repeat | 68 | 157 | IPR013150 | GO:0017025 | |
| Vimu6g03351 | 807 | Pfam | Transcription factor TFIIB repeat | 169 | 246 | IPR013150 | GO:0017025 | |
| Vimu6g03351 | 807 | SUPERFAMILY | Zinc beta-ribbon | 2 | 43 | - | - | |
| Vimu6g03351 | 807 | Gene3D | - | 173 | 260 | - | - | |
| Vimu6g03351 | 807 | Gene3D | Single helix bin | 477 | 545 | - | - | |
| Vimu6g03351 | 807 | FunFam | Transcription factor IIIB subunit | 173 | 257 | - | - | |
| Vimu6g03351 | 807 | CDD | CYCLIN_TFIIIB90_rpt2 | 170 | 245 | - | - | |
| Vimu6g03351 | 807 | SMART | cyclin_7 | 176 | 272 | IPR013763 | - | |
| Vimu6g03351 | 807 | SMART | cyclin_7 | 69 | 158 | IPR013763 | - | |
| Vimu6g03351 | 807 | PRINTS | Transcription initiation factor IIB signature | 119 | 138 | IPR000812 | GO:0006352|GO:0070897 | |
| Vimu6g03351 | 807 | PRINTS | Transcription initiation factor IIB signature | 213 | 229 | IPR000812 | GO:0006352|GO:0070897 | |
| Vimu6g03351 | 807 | PRINTS | Transcription initiation factor IIB signature | 16 | 36 | IPR000812 | GO:0006352|GO:0070897 | |
| Vimu6g03351 | 807 | MobiDBLite | consensus disorder prediction | 462 | 491 | - | - | |
| Vimu6g03351 | 807 | SUPERFAMILY | Cyclin-like | 74 | 162 | IPR036915 | - | |
| Vimu6g03351 | 807 | Coils | Coil | 534 | 554 | - | - | |
| Vimu6g03351 | 807 | Gene3D | - | 63 | 165 | - | - | |
| Vimu6g03351 | 807 | MobiDBLite | consensus disorder prediction | 460 | 493 | - | - | |
| Vimu6g03351 | 807 | Gene3D | Single helix bin | 665 | 713 | - | - | |
| Vimu6g03351 | 807 | PANTHER | TRANSCRIPTION INITIATION FACTOR IIB-RELATED | 2 | 617 | IPR000812 | GO:0006352|GO:0070897 | |
| Vimu6g03351 | 807 | CDD | CYCLIN_TFIIIB90_rpt1 | 70 | 160 | - | - | |
| Vimu6g03351 | 807 | Pfam | Brf1-like TBP-binding domain | 672 | 794 | IPR011665 | - | |
| Vimu6g03351 | 807 | Pfam | Brf1-like TBP-binding domain | 502 | 631 | IPR011665 | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Vimu6g03351 | Vimu-Chr6 | 30119768 | 30141850 | Dispersed/Proximal |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Vimu6g03351 | 386 | 617 | Inorganic Solute Cotransporters | AT2G01280 | 36.017 | 6.56e-22 | 98.2 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Vimu6g03351 | K15196 | - | gmx:100817609 | 419.468 |