Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu6g03346 ATGGAAGATGAGAGGCAGAAAGAGGCAAAGAGTCCAAGGCATGGCCCTGAGAAGAGTGAAGCGGTTCGATCAAGGTGGACTCCCAAGCCGGAACAAATTCTCATACTGGAATCCATCTTCAACAGTGGCATGGTCAATCCTCCCAAAGATGAAACCGTCAGAATAAGGAAGCTGCTTGAGAAATTCGGTGCTGTGGGTGACGCCAACGTCTTCTACTGGTTCCAGAACCGCCGCTCCAGATCCCGCCGCCGCCAGCGCCAGATGATGCAGCAGGCAGTGGCCACCGCTGCTGCGGTTAACCAGCCGCAGCCTCAGCCACAGCCACAGCCTCAGCCTCAGCCTCAGCCGCAGCCTCAGCCTCATGGTCTTGTTGCTGGTGGTGCAATTCAGCATGATCATCATCATAATCAGGTTAACCTTGTTGCAAGTGAAAGTGCTACTTTAAACATGGGTCTTGGTTCTTGTGTTTCTTATGATCTCCTAGGTGGTTCCTCTTCATCGTGTAGTGGTGGTGGAACACAAGGCATGGGTGGTTTCTTTTCTGGTTCTTCTCCTCAAATGGGGTTTCCTGAAATAATTGATCACACCCCACCTTCTCCATCAGTTTTGTTCCCTCCTTTTGATCCTAATTTGACCTTCCAGACTGGATATGGAGGCACTAATATCTCAGCATTCATCACAGTTTTCATCAATGGGATTGCAACAGAACTTCCAAAGGGACCAATAGACATGAAGACTGTATTTGGAGAAGATGTTATGCTAGTTCATTCATCTGGAATGCCTATTCTCCCCAATGATTTCGGTTTCTTGATGCAGAACCTTCAGCATGGAGAAAGCTACTTTCTGGTATCAAAGCCAATATAA 864 0.4815 MEDERQKEAKSPRHGPEKSEAVRSRWTPKPEQILILESIFNSGMVNPPKDETVRIRKLLEKFGAVGDANVFYWFQNRRSRSRRRQRQMMQQAVATAAAVNQPQPQPQPQPQPQPQPQPQPHGLVAGGAIQHDHHHNQVNLVASESATLNMGLGSCVSYDLLGGSSSSCSGGGTQGMGGFFSGSSPQMGFPEIIDHTPPSPSVLFPPFDPNLTFQTGYGGTNISAFITVFINGIATELPKGPIDMKTVFGEDVMLVHSSGMPILPNDFGFLMQNLQHGESYFLVSKPI 287
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu6g03346 287 ProSiteProfiles 'Homeobox' domain profile. 19 84 IPR001356 GO:0003677
Vimu6g03346 287 MobiDBLite consensus disorder prediction 103 119 - -
Vimu6g03346 287 SUPERFAMILY Homeodomain-like 17 91 IPR009057 -
Vimu6g03346 287 MobiDBLite consensus disorder prediction 79 126 - -
Vimu6g03346 287 Pfam Homeodomain 23 83 IPR001356 GO:0003677
Vimu6g03346 287 Gene3D - 23 90 - -
Vimu6g03346 287 SMART HOX_1 21 88 IPR001356 GO:0003677
Vimu6g03346 287 MobiDBLite consensus disorder prediction 86 102 - -
Vimu6g03346 287 PANTHER WUSCHEL-RELATED HOMEOBOX 11 1 285 IPR044558 GO:0003700|GO:0048830
Vimu6g03346 287 MobiDBLite consensus disorder prediction 1 28 - -
Vimu6g03346 287 MobiDBLite consensus disorder prediction 1 25 - -
Vimu6g03346 287 FunFam WUSCHEL-related homeobox 11 23 90 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu6g03346 Vimu-Chr6 30008096 30010340 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu6g03346 19 283 Wox Gene Family AT5G17810 44.523 7.72e-60 189
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-WOX Vimu6g03346 Homeodomain 1.2e-12 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu6g03346 - - gmx:100818735 310.842