Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu6g03344 ATGGATTCTTCTTCATGGTACTTCAATAATGTTGTTGGTGAAGGTTTCAATGGAGTCATGAGTTTCATCCCTTCTTTTCACGTGGGTTCTCAAGCTCCGCCCTTGGGTCACGGCAAGGGGGTTTTGGGTCCAAACCTTGACATGGGTTTTCAGATGTTGAGCCCTTCAATGGTTCAGCAGCAGGAGAGTAGGGGAAAAAAGAGAACAAGTGATGAAGGGGTTACAAACAAGAACCTGTCTTTGAAACGTGAGGAAGAAGAAGAAGCTAACGGCTCCGTTTCAGGGAAAAACGGGTTCACCAAGCTTTGTGCCAGAGGTCACTGGAGGCCAGCAGAAGATGACAAGCTGAAGGAGCTGGTGGCTCAATATGGTCCCCAAAACTGGAACTTGATCGCTGAACATTTAGAAGGAAGATCAGGAAAAAGTTGTAGATTGAGATGGTTTAACCAGTTAGATCCTAAGATCAACAAAAAGTGTTTCTGTGAGGAAGAAGAAGAAAGGCTTTTGACTGCTCATAAAATGTATGGCAGCAAATGGGCCATGATTGCAAGACTATTTCCTGGAAGAACAGATAATGCAGTGAAGAACCATTGGCATGTGATGATGTCTAGGAGGCAGAGGGAGAGGGAGCAATCTAGTGGCGTGTATAGAAGGAGAAAACCTCTTATCAATGAACCTCTTCCAAAGGGTTTGAATCTGACACTGTCTAACAATGCAACCAGTGATGAGTCAACCATCTCAAACACCATTGATGAATCTGCCTCAACTTGCACCAACCTCTCTCTCATTCCCTCTTCAGCCAAGTTCACTCCTTTTGGACTCTCACACCAACCAGGAGAATCAAGAGAGGAGGATGTGTGGTTGAAGAAGTATTTTGGTGGTTGGAAAGTGGGAAAAAGGGTAATGGGAGTGGACCAGTCTAGTTTTTCAGATGCAAACTCAGAAGTATCAGTATCTGAGTCAGGTATCACCAATAGGTCTAATCTCTCAATTTCTGAAGAGAAAGAGAGTGATAAGATTAACAACATCTCATTCATTGATTTTCTTGGAGTAGGAGCTACTTAG 1065 0.4366 MDSSSWYFNNVVGEGFNGVMSFIPSFHVGSQAPPLGHGKGVLGPNLDMGFQMLSPSMVQQQESRGKKRTSDEGVTNKNLSLKREEEEEANGSVSGKNGFTKLCARGHWRPAEDDKLKELVAQYGPQNWNLIAEHLEGRSGKSCRLRWFNQLDPKINKKCFCEEEEERLLTAHKMYGSKWAMIARLFPGRTDNAVKNHWHVMMSRRQREREQSSGVYRRRKPLINEPLPKGLNLTLSNNATSDESTISNTIDESASTCTNLSLIPSSAKFTPFGLSHQPGESREEDVWLKKYFGGWKVGKRVMGVDQSSFSDANSEVSVSESGITNRSNLSISEEKESDKINNISFIDFLGVGAT 354
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu6g03344 354 Pfam Myb-like DNA-binding domain 105 151 IPR001005 -
Vimu6g03344 354 Pfam Myb-like DNA-binding domain 159 200 IPR001005 -
Vimu6g03344 354 Gene3D - 105 156 - -
Vimu6g03344 354 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 162 206 IPR017930 -
Vimu6g03344 354 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 105 155 IPR017930 -
Vimu6g03344 354 PANTHER MYB PROTEIN-RELATED 105 250 - -
Vimu6g03344 354 MobiDBLite consensus disorder prediction 57 93 - -
Vimu6g03344 354 CDD SANT 168 202 IPR001005 -
Vimu6g03344 354 ProSiteProfiles Myb-like domain profile. 105 151 IPR001005 -
Vimu6g03344 354 CDD SANT 108 149 IPR001005 -
Vimu6g03344 354 Gene3D - 160 219 - -
Vimu6g03344 354 FunFam MYB transcription factor 105 156 - -
Vimu6g03344 354 SMART sant 156 204 IPR001005 -
Vimu6g03344 354 SMART sant 104 153 IPR001005 -
Vimu6g03344 354 MobiDBLite consensus disorder prediction 64 91 - -
Vimu6g03344 354 ProSiteProfiles Myb-like domain profile. 152 202 IPR001005 -
Vimu6g03344 354 SUPERFAMILY Homeodomain-like 105 198 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu6g03344 Vimu-Chr6 29966256 29968296 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu6g03344 86 354 MYB Transcription Factor Family AT5G17800 45.487 3.02e-69 218
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Vimu6g03344 Myb_DNA-binding 8.8e-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu6g03344 K09422 - gmx:100791795 419.853