Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu6g03285 ATGGTGCCCTATAAATCTCAAGGTGGTGCTGAACAAATTGCAAATGTTGAGGTTTTGGGTGGATCTGCTGGAAAAAATGCCACACCGGCGGGAGGAAGTGGGAAGCAGCGTTTAAGGTGGACATCTGATCTTCATGACCGTTTTGTGGATGCCATTACACAACTTGGTGGACCAGATAGTGGGAAAGAGAATGCAATATGGGAATTGCTTGTCCGATTGTCAAGAGCAACCCCAAAAGGTGTCCTTAGAGTGATGGGTGTTCCTGGACTGACCATTTATCATGTTAAAAGCCATTTACAGAAATATCGTCTTGCAAAGTATTTACCTGAATCACCAGCTGATGGTAAAGACTCTAAAGATGAGAAGAGGAATTCTGGAGACAGCTTTTCTGGCGCAGATTCTTCTCCGTGGGTATCCCAATTGGGAATGCCAATCAATGATGCCTTAAGAATGCAGATGGAGGTTCAGAAACGTCTGCATGAGCAGCTTGAGGTTCAGAAGCAATTACAAATGAGAATTGAAGCACAGGGTAAATACTTACAAAAGATCATAGAGGAACAGCAGAAATTAGGTAATACCTTAACAACCTCCGAAACACTTCCTTTATCGCATGATAAGCAAAGTCATCCGCACTCGGAGGCTTCTGGATCTAGTGATGCCCTTGCAAGCACTTTGTCTCCTCGTAAAAAACAGAGAATCGATGATGGTTCCAAGGATGGCTTCACTGCTTCCCATGTAAGGAAGACTGAACAAAAGAATGAGTGCAATGTTGGTCAGTTGGATCCAAATTTGTATGATGATGCTGGGTTTGGATTTAATTTGGTGACAAACAAGGATGAACATAAGGAGAGTGGACAGTAA 861 0.4309 MVPYKSQGGAEQIANVEVLGGSAGKNATPAGGSGKQRLRWTSDLHDRFVDAITQLGGPDSGKENAIWELLVRLSRATPKGVLRVMGVPGLTIYHVKSHLQKYRLAKYLPESPADGKDSKDEKRNSGDSFSGADSSPWVSQLGMPINDALRMQMEVQKRLHEQLEVQKQLQMRIEAQGKYLQKIIEEQQKLGNTLTTSETLPLSHDKQSHPHSEASGSSDALASTLSPRKKQRIDDGSKDGFTASHVRKTEQKNECNVGQLDPNLYDDAGFGFNLVTNKDEHKESGQ 286
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu6g03285 286 MobiDBLite consensus disorder prediction 228 254 - -
Vimu6g03285 286 MobiDBLite consensus disorder prediction 200 262 - -
Vimu6g03285 286 SUPERFAMILY Homeodomain-like 34 104 IPR009057 -
Vimu6g03285 286 MobiDBLite consensus disorder prediction 110 127 - -
Vimu6g03285 286 Pfam MYB-CC type transfactor, LHEQLE motif 143 189 IPR025756 -
Vimu6g03285 286 NCBIfam myb-like DNA-binding domain, SHAQKYF class 71 105 IPR006447 GO:0003677
Vimu6g03285 286 NCBIfam myb-like DNA-binding domain, SHAQKYF class 35 60 IPR006447 GO:0003677
Vimu6g03285 286 Gene3D - 34 108 - -
Vimu6g03285 286 Coils Coil 146 166 - -
Vimu6g03285 286 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL11 34 233 IPR044848 GO:0003700
Vimu6g03285 286 MobiDBLite consensus disorder prediction 110 140 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu6g03285 Vimu-Chr6 29419562 29422256 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu6g03285 29 213 G2-like Transcription Factor Family AT3G13040 46.277 3.13e-45 156
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Vimu6g03285 Myb_CC_LHEQLE 9.7e-25 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu6g03285 - - gmx:100783132 446.432