Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu6g03284 ATGGGATCTCAAGGTGGGGCAATCCAGGAGCCAAAGAATGGGTCTTTGGCAAGGCAAGGGTCTTTGTACAATCTCACCCTTGACGAGGTGCACAACCAGCTTGGAAATTTGGGGAAACCCTTAGGAAGCATGAATCTTGATGAGCTGCTCAAGGGTGTGTGGACTGCAGAATCTGGAACTGATGCATACATGCAGCAAGGTCAGGTAGTTTCTGCTGGATCATCTTTGAACCCTCAAGGGAGTCTAACATTGTATGGGGATCTTAGCAAGAAAACAATTGATGAGGTTTGGAGAGATATGCAACAGAAGAAGAGTGTTAGTCAGGAAAGAGAAAGACAGCCTACACTGGGTGAGATGACCCTGGAGGATTTCTTGGTGAAGGCTGGTGTGACTACTGAACCTTTCTCTAATGAGGATAGTTCCATGGCCATGCCAGGGGTTGATTCCCAACACAACACATCACAACATTCTCATTGGCTGCAATACCAGCTCGCTCCAGTGCAGGAGCCGCCACAACAACAACATCATCAACATCAAAATCAGCAGAATACCATGATGCCGGGTTTTTCCGGTTTTATGGCTGTTCAACAGCCTATGCCGGTTGTGGTGAATCCGGTTCTGGATGCAGGATACTCTGAATCAATGCCGTCTTCTTTGATGGGTGCCTTATCTGATTCACAATCTGCAGGTAGGAAAAGGGCTGCCTCAGGTAATGTGGTTGAGAAAACTGTGGAGAGGAGGCAGAAGAGGATGATTAAAAATAGGGAATCAGCAGCTAGGTCCCGGGCTAGAAAGCAGGCATACACACAAGAACTGGAGATTAAAGTTTCTCGTTTAGAAGAAGAGAATGAAAGGCTTAGAAGACAGAATGGTTCTTTAAAGTTGGACATAGGACAGAGGCTCCAAGATGTTGTGACCATATCAGGTGAAGAAAAAAGTGCTGAGAAGGGTCATAAGGAGGTAGATCAGCAGACTTCTCTAGAGCTCATTTGTGGAGAGGTACGAAGATTTCAATTCAATGTTAAAAAGATAGATTCACTTTGGCTAAAGTTTGGAGTACTTTATGGCTTCAAGATATGGCCAACCATTTTGCTTGCAGTTAGTCTGGCTGACACATTTCAAGAGATAGAGAAGGTATTGCCAAGTGCACCGCCACCAGACCCTAAGCATCAGCTGCGCAGAACTAGTTCAGCTCCCCTTTGA 1203 0.4572 MGSQGGAIQEPKNGSLARQGSLYNLTLDEVHNQLGNLGKPLGSMNLDELLKGVWTAESGTDAYMQQGQVVSAGSSLNPQGSLTLYGDLSKKTIDEVWRDMQQKKSVSQERERQPTLGEMTLEDFLVKAGVTTEPFSNEDSSMAMPGVDSQHNTSQHSHWLQYQLAPVQEPPQQQHHQHQNQQNTMMPGFSGFMAVQQPMPVVVNPVLDAGYSESMPSSLMGALSDSQSAGRKRAASGNVVEKTVERRQKRMIKNRESAARSRARKQAYTQELEIKVSRLEEENERLRRQNGSLKLDIGQRLQDVVTISGEEKSAEKGHKEVDQQTSLELICGEVRRFQFNVKKIDSLWLKFGVLYGFKIWPTILLAVSLADTFQEIEKVLPSAPPPDPKHQLRRTSSAPL 400
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu6g03284 400 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 249 264 IPR004827 GO:0003700|GO:0006355
Vimu6g03284 400 Coils Coil 262 296 - -
Vimu6g03284 400 PANTHER CAMP-RESPONSE ELEMENT BINDING PROTEIN-RELATED 16 338 IPR043452 GO:0003700|GO:0045893
Vimu6g03284 400 Pfam bZIP transcription factor 246 298 IPR004827 GO:0003700|GO:0006355
Vimu6g03284 400 SUPERFAMILY Leucine zipper domain 246 294 IPR046347 GO:0003700|GO:0006355
Vimu6g03284 400 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 244 294 IPR004827 GO:0003700|GO:0006355
Vimu6g03284 400 MobiDBLite consensus disorder prediction 135 158 - -
Vimu6g03284 400 FunFam ABSCISIC ACID-INSENSITIVE 5-like protein 2 244 297 - -
Vimu6g03284 400 MobiDBLite consensus disorder prediction 222 242 - -
Vimu6g03284 400 Gene3D - 244 297 - -
Vimu6g03284 400 MobiDBLite consensus disorder prediction 380 400 - -
Vimu6g03284 400 SMART brlzneu 242 306 IPR004827 GO:0003700|GO:0006355
Vimu6g03284 400 CDD bZIP_plant_BZIP46 246 295 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu6g03284 Vimu-Chr6 29413684 29416881 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu6g03284 374 400 bZIP Transcription Factor Family AT3G56850 77.778 8.63e-08 51.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bZIP Vimu6g03284 bZIP_1 8.1e-15 CL0018
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu6g03284 K14432 - gmx:100783666 443.351