Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu6g03283 ATGGGGAAGAAGCGAAAGGTAGCACCCAAATCTTCTCAATCTGCTGAACCTCCGCTCAAGCATCACCAACCCGAACCCCAAATTGCGCCACCCGAGTACGAGGAAGTCGAAGAGGAAGAGGAGGAAGAAGAAGTAGAGGAAGTAGAAGAAGAGGAGGAGGAGGAGGAAGAAGAAGAAGAAGAGGACGATGAAGAGCAACAACAGCAACAAGACGAGGACGACGACCCGATCGAAAAGCTTCTGGAACCTTTAAGCAAGGACCAGATCTTAAACCTTCTATGCGAGGCGGCGGCAAATCACCGCGACGTGGCGGACCGGATCCGTAAGGCGGCTGACGAGGATCCCGTGCACAGGAAGATCTTTGTGCACGGGCTGGGCTGGGACACAACCGCGGGAACCCTAATCAGTGCGTTCCGGCAGTATGGAGAGATCGAGGACTGCAAGGCCGTCACGGATAAGGTTTCTGGCAAGTCCAAAGGTTACGGCTTCATCCTCTTCAAGACGCGGCGCGGCGCGCGCAACGCGCTAAAGCAGCCGCAGAAGAAGATCGGCAATCGCATGACGGCGTGCCAGCTGGCGTCCATCGGCCCCGTCAGTGGCAGCCAGAGCCAGCCGCAGGCAATGCCTTCCTCAGCGCCGACGCTGTCATCGTCGGCTTCGGAGTACACGCAGAGGAAGATCTACGTGAGCAACGTCGGTGCGGAACTCGATCCGCAGAAGCTTCTGGCGTTCTTTTCACGGTTCGGGGAAATTGAGGAGGGGCCTTTGGGTCTGGATAAGCTAACAGGAAAACCGAAGGGGTTTTGTTTGTTTGTTTACAGGAGTCCGGAGAGTGCGAAGAGAGCCTTGGAAGAGCCTCATAAGGACTTTGAGGGGCATATTTTGCATTGCCAGAAGGCGATTGATGGGCCCAAGCCTGGGAAGTTGCAGCAGCAGCAACACGGGAACGTGAATGCTCAGGTCCAGCGGACTCAGTTTCAGAGGAATGATACTGCCAATGCAGGTGGCGCGTATGTTGGTAGTGCTGCAGCAGCGCAGCCGGGACACTTGATGGCTCCCGCTGGGCCAGGGATTGGGTTTAACCAAGCGGCGTTGAATCCGGCGTTGGGGCAGGCGTTGACGGCCCTCCTGGCATCGCAAGGGACGTTGGGGCTGAATTTGTTGGGGAGTATTGGAACGAGTGCTGCTGTGAACCCTGGTGTGCCTGCTGCAGGGGCTGGAGTACAGAGTGGCTACAGTGCTCAGTCAAATATTAGTCCGGGTGTTATTGGTGGATATGGGACCCAGGTGGGGTTGCAGGCTGCATATCCGAATCCGAATCAGCAGATAGGGCAGGGTGGTTCTGGAAGAGGGCAATATGGTGGTGGTGGTGCGCCTTACATGGGGCATTAG 1392 0.5654 MGKKRKVAPKSSQSAEPPLKHHQPEPQIAPPEYEEVEEEEEEEEVEEVEEEEEEEEEEEEEDDEEQQQQQDEDDDPIEKLLEPLSKDQILNLLCEAAANHRDVADRIRKAADEDPVHRKIFVHGLGWDTTAGTLISAFRQYGEIEDCKAVTDKVSGKSKGYGFILFKTRRGARNALKQPQKKIGNRMTACQLASIGPVSGSQSQPQAMPSSAPTLSSSASEYTQRKIYVSNVGAELDPQKLLAFFSRFGEIEEGPLGLDKLTGKPKGFCLFVYRSPESAKRALEEPHKDFEGHILHCQKAIDGPKPGKLQQQQHGNVNAQVQRTQFQRNDTANAGGAYVGSAAAAQPGHLMAPAGPGIGFNQAALNPALGQALTALLASQGTLGLNLLGSIGTSAAVNPGVPAAGAGVQSGYSAQSNISPGVIGGYGTQVGLQAAYPNPNQQIGQGGSGRGQYGGGGAPYMGH 463
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu6g03283 463 MobiDBLite consensus disorder prediction 1 74 - -
Vimu6g03283 463 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT G 19 313 - -
Vimu6g03283 463 FunFam UBP1-associated protein 2A 111 195 - -
Vimu6g03283 463 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 225 314 IPR000504 GO:0003723
Vimu6g03283 463 Gene3D - 30 198 IPR012677 -
Vimu6g03283 463 FunFam UBP1-associated protein 2A 211 341 - -
Vimu6g03283 463 MobiDBLite consensus disorder prediction 197 218 - -
Vimu6g03283 463 SUPERFAMILY RNA-binding domain, RBD 205 320 IPR035979 GO:0003676
Vimu6g03283 463 Coils Coil 33 74 - -
Vimu6g03283 463 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 118 195 IPR000504 GO:0003723
Vimu6g03283 463 MobiDBLite consensus disorder prediction 440 463 - -
Vimu6g03283 463 SUPERFAMILY RNA-binding domain, RBD 110 200 IPR035979 GO:0003676
Vimu6g03283 463 Gene3D - 199 318 IPR012677 -
Vimu6g03283 463 MobiDBLite consensus disorder prediction 31 74 - -
Vimu6g03283 463 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 227 294 IPR000504 GO:0003723
Vimu6g03283 463 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 120 186 IPR000504 GO:0003723
Vimu6g03283 463 SMART rrm1_1 226 298 IPR000504 GO:0003723
Vimu6g03283 463 SMART rrm1_1 119 191 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu6g03283 Vimu-Chr6 29390409 29399027 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu6g03283 212 400 C2H2 Transcription Factor Family AT2G19380 25.628 1.90e-10 61.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu6g03283 K12741 - gmx:100784200 643.654