Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu6g03264 ATGGAACACCATTTTGGTCAAGACGCTGCACCTGCATCTGGGTCCTTTGATAAGACTAGGGTTTTGAACGTGAAGCCATTAAGAACGCTTGTTCCTGTGTTCCCTTCACCATCTAATCCTGCTTCATCTTCAGCTCCACAAGGGGGTGCTCCATTTGTCTGTGTTTCACCTTCTGGTCCTTTCCCTTCTGGGGTTGCACCATTCTATCCATTCTTCATCTCCCCGGAGTCCCAGAGGCTCTCAGAGCAGAATGCACAAACCCCCACTGGTCAACGTGTGCCTGCTACTCCTGCTGCTCCGATATCGACTGCAGTTCCAATTAATTCATTCAGGACGCCAACTGGAGCTACTAATGGTGATTTGGGCACATCGAGAAGGAGTACCCGAACTCGGGGACAGGTCGCACAGGAAGATGGCTACAGTAATGCTGTGATAGAGGAAGTTGAGGCAGATGCAACAGCTGTGACTAAAAGATCAAAGCGCAAGTTGCAGAACAAGATAAAGGGACCGCAGAGTGTTGGTTCTGGGGATGTTGATCCAGATGCAGTGGCTGCTGATATTCTCAAGTCACTTAACCCATTGGTTTTCAATGTACTAAATCAACCCGAAGGTAGCAGGGACTCAGTTGCATATACACTCATGATATATGAAGTGATGCGAAGGAAGCTTGGACAAATTGAGGATTCAAATAGGGCTGCTAACGCTGGAGCAAAACGACCGGACTTGAGGGCAGGTGCAATTATGATGAATAAAGGGATTCGGACCAACAGCAAGAAACATATCGGACTTGTGTCTGGTGTTGAGATTGGGGATATTTTCTATTTCAGATTTGAATTATGCTTAGTGGGTTTACATTCACCTTCTATGGCTGGAATTGATTACATCGGTACCAAAACCAGTCAAGAGGAAGAGCCCTTAGCTGTAAGTATTGTCTCATCTGGAGGGTATGAAGATGATGTGGAGGATGGGGATGTGCTGATTTACAGTGGCCAAGGTGGGGTTAACCGTGACAAGGGAGAAAGTGATCAAAAGCTTGAAAGGGGTAATCTTGCTTTGGATAACAGTGCTCGTAGAGGTAACGAAGTGAGGGTAATTAGGGGTTTGAAGGATTTGTATCATCCAACGGGGAAGGTATATGTCTATGATGGTCTTTACAAGATTCAAGATTCCTGGGTGGACAAATCAAAATCTGGTTTCAATGTGTTCAAGTATAAATTAGGCAGGTTGCCTGGACAGCCTCCAGCATATATGATTTGGAAATCCATTCAACAATGGACTGAGAAATCTGCTCCAAGAGCTGGGGTTATATTGCCTGATCTTACTTCTGGGGCCGAAAAAGTACCTGTTTGTCTTGTGAATGATGTTGATGCCGAGAAGGGCCCTGCATATTTCACTTACCTCCCAAATCTTAAGAATTTGAGGCCAACTGCTCCGCTGGAATCCTCTATTGGATGTTCTTGTGTTGGTGGATGCCAACCTAACAATTCTAACTGTCCTTGTGTTCAAAAGAACGGTGGCTATCTACCATATTCTTCAGCTTCATTAATTGCAGACCTAAAATCTGTTATATATGAGTGTGGTCCTTCTTGTCAATGTCCTCCGAATTGCCGAAACAAGGTTTCGCAAGGTGGCTTGAAGTTTCGTTTGGAGGTTTATAAAACCAAGAATAAAGGATGGGCTCTTAGATCATGGGATGCTATTCGAGCCGGATCTTTCATATGTGAGTATGCTGGGGAAGTCATAGACAGTGCCAGAGTGGAGGAGGAGCTTGGTGGTGACAATCTTGATGATTACATTTTTGATTCTACTCGCATTTATCAGCAACTGGAAGTTTTTCCAGGTGACACTGAAGCTCCAAAAATCCCATCCCCCCTATATATATCAGCAATAAATGAAGGAAATGTTGCTCGGTTTATGAATCACAGCTGCTCTCCAAATGTACTATGGCGTCCAGTCATACATGAAAATAAGAATTTTTCAGATCTCCACATTGCTTTCTATGCAATTAGACATATCCCTCCTATGATGGAGTTAACTTTTGATTATGGGACGGTTCTTCCTCTCAAGGCAGGTCATAGGAAAAAGAAATGCTTATGTGAATCTGTGAAATGCAGGGGTTACTTTTGA 2127 0.4405 MEHHFGQDAAPASGSFDKTRVLNVKPLRTLVPVFPSPSNPASSSAPQGGAPFVCVSPSGPFPSGVAPFYPFFISPESQRLSEQNAQTPTGQRVPATPAAPISTAVPINSFRTPTGATNGDLGTSRRSTRTRGQVAQEDGYSNAVIEEVEADATAVTKRSKRKLQNKIKGPQSVGSGDVDPDAVAADILKSLNPLVFNVLNQPEGSRDSVAYTLMIYEVMRRKLGQIEDSNRAANAGAKRPDLRAGAIMMNKGIRTNSKKHIGLVSGVEIGDIFYFRFELCLVGLHSPSMAGIDYIGTKTSQEEEPLAVSIVSSGGYEDDVEDGDVLIYSGQGGVNRDKGESDQKLERGNLALDNSARRGNEVRVIRGLKDLYHPTGKVYVYDGLYKIQDSWVDKSKSGFNVFKYKLGRLPGQPPAYMIWKSIQQWTEKSAPRAGVILPDLTSGAEKVPVCLVNDVDAEKGPAYFTYLPNLKNLRPTAPLESSIGCSCVGGCQPNNSNCPCVQKNGGYLPYSSASLIADLKSVIYECGPSCQCPPNCRNKVSQGGLKFRLEVYKTKNKGWALRSWDAIRAGSFICEYAGEVIDSARVEEELGGDNLDDYIFDSTRIYQQLEVFPGDTEAPKIPSPLYISAINEGNVARFMNHSCSPNVLWRPVIHENKNFSDLHIAFYAIRHIPPMMELTFDYGTVLPLKAGHRKKKCLCESVKCRGYF 708
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu6g03264 708 SUPERFAMILY SET domain 423 689 IPR046341 -
Vimu6g03264 708 Gene3D SET domain 430 708 IPR046341 -
Vimu6g03264 708 Gene3D - 244 429 IPR036987 -
Vimu6g03264 708 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE SETMAR 101 701 - -
Vimu6g03264 708 Pfam SAD/SRA domain 260 412 IPR003105 -
Vimu6g03264 708 SUPERFAMILY PUA domain-like 245 427 IPR015947 -
Vimu6g03264 708 FunFam Histone-lysine N-methyltransferase, H3 lysine-9 specific SUVH5 245 427 - -
Vimu6g03264 708 ProSiteProfiles Pre-SET domain profile. 483 544 IPR007728 GO:0005634|GO:0008270|GO:0034968|GO:0042054
Vimu6g03264 708 SMART preset_2 437 531 IPR007728 GO:0005634|GO:0008270|GO:0034968|GO:0042054
Vimu6g03264 708 MobiDBLite consensus disorder prediction 106 137 - -
Vimu6g03264 708 SMART G9a_1 257 412 IPR003105 -
Vimu6g03264 708 ProSiteProfiles YDG domain profile. 262 408 IPR003105 -
Vimu6g03264 708 SMART set_7 547 689 IPR001214 GO:0005515
Vimu6g03264 708 Pfam SET domain 558 683 IPR001214 GO:0005515
Vimu6g03264 708 Pfam Pre-SET motif 441 539 IPR007728 GO:0005634|GO:0008270|GO:0034968|GO:0042054
Vimu6g03264 708 ProSiteProfiles Histone-lysine N-methyltransferase (EC 2.1.1.43) family profile. 124 708 IPR025794 GO:0016571
Vimu6g03264 708 ProSiteProfiles SET domain profile. 547 683 IPR001214 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu6g03264 Vimu-Chr6 29240738 29246362 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu6g03264 6 708 Su(var)3-9 homologs AT1G73100 46.556 0.0 605
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Vimu6g03264 SAD_SRA 1.8e-49 CL0178
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu6g03264 K24405 - gmx:100786650 1197.19