Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu6g03239 ATGCCAATGGCAGTTTCTCATCTGAGCCACTCTCATCAAAATCAACTGAAAACTGAAGACTCACAATTCTCTTTCAAGGAAATTGGAAATGAAGGTCTCACTAAGCGGATTCTCAGAAAAGGAGTCTCTTGGCAAACTCCATTCTCTGGAGATGAAGTGGAAGTTCATTTCAGAGGACATGTTGAGAATGGAGCATCTCTTGAATCCAGTTATGATAAAGGGTTCACGTTTCGTTTCAAATTAGGCCAGTGTGAAGTTATCAAAGGATGGGATGAAGGAGTTGCCACCATGAAGAAAGGGGAGAGAGCAATCTTCAAAATACCACCTAACTTGGCATATGGGGAAGAAGGTTCTCCTCCATTGGTTCCTCCCAATGCAACTCTCGTTTATGAAATTGAAATGCTGTCTTGGAGCACCATAAGGGATTTGACTGGGGATGGAGGAATCATGAAAAAGCTGATAAGAGAGGGAGAAGGATGGGCCACTCCCAGAGAAGATGACGAGGTGCTAGTGAAATATGAAGCAAGGCTGGAGAATGAGATGGTTGTCTCAAAGTCTGAACAGGGAGTGGAGTTTAATGTAAGTGATGGCTATCTATGTCCTGCTATGAGTATAGCAGTAAAGACAATGAGAAAGGGCGAAGTGGCAGAACTAGCAGTGAGATTATTTTACGGGCAGAGTAAAAATTCAAATATGACCACTGATCTAGATGGTGTTTCTCCACCAGATTCTAATTTAACTAGCATCAAGCTTGAGCTGGTATCATGGAAAGTTGTTACAGATGTCACAGGAGACAAGAAGATACTGAAAAAAATTAAGAAAGTGGGTGAGGGGTTTGATCGTCCTAACGAGGGATCCCAAGTGAAAGTGATATATTTGTGCAAAGGGGAAGATGATACTGTTATTGAGAGGAAAGGATCAGAGGAAGAACCTTTTGAGTTCACAACTCAGGAAGAACAAGTACCCGAGGGTCTAGAAAGAGCAATAATGACAATGAAAAAAGCAGAACAAGCTCTTGTAATCGTCCATGCAGAATATTTGTGCGGCTATAATAATTCACAGGGAAACACAGCAAATATTAAAGTCCTTTATTATGAAGTTGAGTTGGTTGATTTTGTTAAGGAAAAACCATTTTGGAAAATGAACACAGAAGAGAAAATAGAAGCCTGTGAGAGGAAGAAGCATGACGGAAATCTGCTGTTCAAAGCTGAAAATTTCATGCACGCATCTAAGAAATATGAAAAGGCTGTAAAGTACATTGAGTTTGATCACTCATTCAGTGAAGATGAGAAGCATCGTTCTAATACCTTACGTTTATCCTGCAACTTGAACAATGCTGCCTGCAAACTTAAATTGGGAGAGTATATTGAAGCTTCAAGACTATGCACAAAGGTCCTACAACAAGACCCTTCAAATATCAAGGCTCTTTATAGAAGATGCCAAGCATACATGAAAACATCAGACTTGGAGAAAGCTGAGGCTGACATTAAAAGAGCTTTGACCATTGATCCAAATAACAGGTACCAAGCACTATCCATTGCATTTTCAAGCTCTACTGTTCAATATCTGCTCTTCACAATTTTTATTTTGTCTTGGATAAATGAATGA 1608 0.3986 MPMAVSHLSHSHQNQLKTEDSQFSFKEIGNEGLTKRILRKGVSWQTPFSGDEVEVHFRGHVENGASLESSYDKGFTFRFKLGQCEVIKGWDEGVATMKKGERAIFKIPPNLAYGEEGSPPLVPPNATLVYEIEMLSWSTIRDLTGDGGIMKKLIREGEGWATPREDDEVLVKYEARLENEMVVSKSEQGVEFNVSDGYLCPAMSIAVKTMRKGEVAELAVRLFYGQSKNSNMTTDLDGVSPPDSNLTSIKLELVSWKVVTDVTGDKKILKKIKKVGEGFDRPNEGSQVKVIYLCKGEDDTVIERKGSEEEPFEFTTQEEQVPEGLERAIMTMKKAEQALVIVHAEYLCGYNNSQGNTANIKVLYYEVELVDFVKEKPFWKMNTEEKIEACERKKHDGNLLFKAENFMHASKKYEKAVKYIEFDHSFSEDEKHRSNTLRLSCNLNNAACKLKLGEYIEASRLCTKVLQQDPSNIKALYRRCQAYMKTSDLEKAEADIKRALTIDPNNRYQALSIAFSSSTVQYLLFTIFILSWINE 535
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu6g03239 535 Gene3D - 140 257 IPR046357 GO:0003755
Vimu6g03239 535 SUPERFAMILY FKBP-like 16 136 - -
Vimu6g03239 535 PANTHER PEPTIDYLPROLYL ISOMERASE 26 138 - -
Vimu6g03239 535 Gene3D - 258 375 IPR046357 GO:0003755
Vimu6g03239 535 FunFam Peptidyl-prolyl cis-trans isomerase 26 138 - -
Vimu6g03239 535 Pfam FKBP-type peptidyl-prolyl cis-trans isomerase 47 135 IPR001179 GO:0003755
Vimu6g03239 535 Pfam FKBP-type peptidyl-prolyl cis-trans isomerase 162 231 IPR001179 GO:0003755
Vimu6g03239 535 Pfam FKBP-type peptidyl-prolyl cis-trans isomerase 281 370 IPR001179 GO:0003755
Vimu6g03239 535 Gene3D Tetratricopeptide repeat domain 376 517 IPR011990 GO:0005515
Vimu6g03239 535 SUPERFAMILY FKBP-like 256 392 - -
Vimu6g03239 535 Pfam Tetratricopeptide repeat 450 511 - -
Vimu6g03239 535 MobiDBLite consensus disorder prediction 1 21 - -
Vimu6g03239 535 ProSiteProfiles TPR repeat profile. 473 506 IPR019734 GO:0005515
Vimu6g03239 535 ProSiteProfiles FKBP-type peptidyl-prolyl cis-trans isomerase domain profile. 285 373 IPR001179 GO:0003755
Vimu6g03239 535 MobiDBLite consensus disorder prediction 7 21 - -
Vimu6g03239 535 SUPERFAMILY TPR-like 379 508 IPR011990 GO:0005515
Vimu6g03239 535 SMART tpr_5 473 506 IPR019734 GO:0005515
Vimu6g03239 535 SMART tpr_5 439 472 IPR019734 GO:0005515
Vimu6g03239 535 SMART tpr_5 390 423 IPR019734 GO:0005515
Vimu6g03239 535 ProSiteProfiles FKBP-type peptidyl-prolyl cis-trans isomerase domain profile. 166 246 IPR001179 GO:0003755
Vimu6g03239 535 ProSiteProfiles FKBP-type peptidyl-prolyl cis-trans isomerase domain profile. 50 138 IPR001179 GO:0003755
Vimu6g03239 535 FunFam Peptidylprolyl isomerase 378 521 - -
Vimu6g03239 535 SUPERFAMILY FKBP-like 143 226 - -
Vimu6g03239 535 Gene3D - 5 139 IPR046357 GO:0003755
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu6g03239 Vimu-Chr6 29000132 29004084 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu6g03239 27 507 Calmodulin-binding Proteins AT5G48570 54.098 0.0 528
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu6g03239 - - pvu:PHAVU_001G118200g 931.784
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu6g03239 6 29000132 29004084 Vimu6g03239 6 29000132 29004084 ECH