Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu6g03235 ATGAGCATGGAGAATGCGGTGTTATCTCGTGCTGGCATGATAGTGAATTCTTCAAGGTTTTTCTTACGTAAGGTCACTCCCGACCGCCAAGACCGGGCCGATGGCGCCGGTCACTCTTGGAATTCCTCAAAAACCGCCACCGCTTCCTCGAATGGACCACCCAAGTCCTCAATGACTGCCCCCACCAACACCGCCGTCATGTCCCGCTCCTACAGATTCAACATCGTCGTAACAGCCAATCCCCACAACGTCGAACATATGCTCAAAACCCGATTCGAAAACTACCCAAAGGGTGAACGCTTCATCCACCCCCTCCAGGACCTCCTCGGCAACGGAATCTTCAACTCCGACAGTGAACTTTGGAAGGTGCAGCGAAAAGTCGCCAGCTACGAGTTTACCACCAGCTCACTCCGTAACTTCATTGTCAACTCCATCACCACCGAACTCCAAACCAGGCTTCTTCCAATTCTTTCCAAAGCCTCCCAGACAAATAGGGTCCTCGATTTGCAGAACCTCCTCGAGCGCTTCTCCTTCGACAACATCTGCAAGCTAGCCTTCAACGTCGACCCCGCCTGTCTCGGCGGTGACTGCACTGCTGGCACTGATTTCATGAGCGCGTTCGAGGATGCAACCAAGCTGAGTTCAGAGAGGAGGCTCCGAGAATCAATCACCACCGTCCACGAGTTCGCTGACTCCATCATACGGTCCAGATTGGAAGCCAAGGAACACACCCGCGACGACGAAGATTTACTTTCTCGTTTCAGCAGAACAAAGGAGAGCTCGCCGGAGTTTCTCTGCGACGTTGTGATAAGTTTCATTCTCGCGGGGCGTGACTCGACCTCGTCCGCGCTCACCTGGTGCTTCTGGATTCTTTCATCCAGACCTCACAACGGCGTGTGCCGAACGGAGAGTCCGTTTCGTTTTCCGGTGTTTCACGCGGGTCCTCGAATGTGTCTGGGAAAAGAAATGGCTTACGTTCAGATGAAGTCCATTGCAGCTTCAGTGGTGGAGAAGTTTGAGATTGAGGCAGCGGATAGGGACACGTGTCCAGAGCATTTGCTTCTTTGA 1068 0.5318 MSMENAVLSRAGMIVNSSRFFLRKVTPDRQDRADGAGHSWNSSKTATASSNGPPKSSMTAPTNTAVMSRSYRFNIVVTANPHNVEHMLKTRFENYPKGERFIHPLQDLLGNGIFNSDSELWKVQRKVASYEFTTSSLRNFIVNSITTELQTRLLPILSKASQTNRVLDLQNLLERFSFDNICKLAFNVDPACLGGDCTAGTDFMSAFEDATKLSSERRLRESITTVHEFADSIIRSRLEAKEHTRDDEDLLSRFSRTKESSPEFLCDVVISFILAGRDSTSSALTWCFWILSSRPHNGVCRTESPFRFPVFHAGPRMCLGKEMAYVQMKSIAASVVEKFEIEAADRDTCPEHLLL 355
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu6g03235 355 MobiDBLite consensus disorder prediction 28 62 - -
Vimu6g03235 355 PANTHER CYTOCHROME P450 302 345 - -
Vimu6g03235 355 MobiDBLite consensus disorder prediction 36 62 - -
Vimu6g03235 355 ProSitePatterns Cytochrome P450 cysteine heme-iron ligand signature. 311 320 IPR017972 GO:0005506|GO:0016705
Vimu6g03235 355 SUPERFAMILY Cytochrome P450 70 347 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vimu6g03235 355 Gene3D Cytochrome P450 300 353 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vimu6g03235 355 Pfam Cytochrome P450 303 348 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vimu6g03235 355 Pfam Cytochrome P450 74 296 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vimu6g03235 355 Gene3D Cytochrome P450 63 298 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu6g03235 Vimu-Chr6 28942238 28943859 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu6g03235 297 354 Cytochrome P450 AT3G56630 60.345 2.04e-18 84.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu6g03235 - - pvu:PHAVU_001G118600g 382.104